[R-sig-hpc] Problem installing Rmpi on SuSE 64 bit system: does compile but does not load

Davor Cubranic cubranic at stat.ubc.ca
Thu Nov 25 20:14:59 CET 2010


On November 25, 2010 12:47:48 am Rainer M Krug wrote:
> installing to /home/rkrug/R/R/R-2.12.0/library/Rmpi/libs
[...]
> ** testing if installed package can be loaded
> /home/rkrug/R/R/R-2.12.0/bin/exec/R: symbol lookup error:
> /usr/lib64/openmpi/mca_paffinity_linux.so: undefined symbol:
> mca_base_param_reg_int
> 
> So - what is happening here? As I understand it, it is compiling, but
> can not be loaded, as "undefined symbol".

You may have to add '/home/rkrug/R/R/R-2.12.0/library/Rmpi/libs' to your 
LD_LIBRARY_PATH environment variable.

Davor



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