[R-sig-hpc] How to check if %dopar% really run parallel?
Mario Valle
mvalle at cscs.ch
Tue May 4 06:22:51 CEST 2010
Is there any way to check that %dopar% really runs parallel?
The following code (on a dual core laptop running windows+R 2.11.0pat
and on Linux+R2.11.0) runs %dopar% more slowly than the same %do% code.
BTW, if you see any obvious mistake in the code...
Thanks!
mario
library(doSNOW)
library(foreach)
fun <- function() for(q in 1:1000000) sqrt(3)
system.time(times(10000) %do% fun, gcFirst = TRUE)
# user system elapsed
# 5.74 0.01 6.24
cl <- makeCluster(2, type = "SOCK")
registerDoSNOW(cl)
system.time(times(10000) %dopar% fun, gcFirst = TRUE)
# user system elapsed
# 7.89 0.19 9.01
stopCluster(cl)
--
Ing. Mario Valle
Data Analysis and Visualization Group |
http://www.cscs.ch/~mvalle
Swiss National Supercomputing Centre (CSCS) | Tel: +41 (91) 610.82.60
v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax: +41 (91) 610.82.82
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