[R-sig-hpc] R and mpicc

Markus Schmidberger schmidb at ibe.med.uni-muenchen.de
Wed Sep 2 10:52:19 CEST 2009


Hi,

has anyone experience with compiling R (R-2.9.2) with mpicc?

Due to our hardware architecture (altix) we have to compile R with mpicc 
and than include Rmpi. Compiling R with gcc and than including Rmpi is 
not working with the altix.mpi version.

Unfortunately the R version compiled with mpicc is about 3-5 times 
slower than the R version compiled with gcc! Any ideas for that?

Thanks
Markus Schmidberger

-- 
Dipl.-Tech. Math. Markus Schmidberger

Ludwig-Maximilians-Universität München
IBE - Institut für medizinische Informationsverarbeitung,
Biometrie und Epidemiologie
Marchioninistr. 15, D-81377 Muenchen
URL: http://www.ibe.med.uni-muenchen.de 
Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de
Tel: +49 (089) 7095 - 4497



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