[R-sig-hpc] mpi_comm_spawn error with Rmpi and snow on SGI Altix

[Gad Abraham]

Ei-ji Nakama wrote:
> Hi, Gad.
> 
>> I added -up to the script called by qsub:
> 
> qsub is OpenPBS?

Ei-ji,

qsub is from Sun Grid Engine

Gad

> 
>> #!/bin/sh
>> #$ -cwd
>> #$ -pe mpi 2
>> mpirun -up 2 -np 1 /home/gabraham/bin/R --vanilla < testsnow.R
> 
> does as follows maybe if it is OpenPBS.
> 
> #!/bin/bash
> #PBS -N testsnow
> #PBS -q <<Name of queue that you of your machine can use>>
> #PBS -l ncpus=3
> #PBS -o testsnow.out
> #PBS -e testsnow.err
> mpirun -up 2 -np 1 /home/gabraham/bin/R CMD BATCH --vanilla testsnow.R
> 
> try `man qsub'.



-- 
Gad Abraham
Dept. CSSE and NICTA
The University of Melbourne
Parkville 3010, Victoria, Australia
email: gabraham at csse.unimelb.edu.au
web: http://www.csse.unimelb.edu.au/~gabraham