[R-sig-hpc] Rmpi install fails...

[Vince Fulco]

Attempted this "CC=mpicc R CMD INSTALL ...." but no luck.

Martin Morgan was kind enough to send another solution to modify the
configure.ac file and hard code the mpi library paths which I'll try
next...

On Thu, Apr 30, 2009 at 12:04 PM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
>
>
> On Thu, Apr 30, 2009 at 11:31 AM, Vince Fulco <vfulco1 at gmail.com> wrote:
>>
>> Per Dirk's suggestion, following up with a *revised* question from
>> R-help of a few days ago...
>>
>> On FC10 with openmpi and mpich2 installed including all -develop and
>> -libs files,
>> the command "R CMD INSTALL Rmpi_0.5-7.tar.gz" fails with the error
>> ''cannot find mpi.h".  Doing a (s)locate indicates the header files
>> exist in ''/usr/include/mpich2/" and ''/usr/include/openmpi/1.2.4-gcc/".
>
> Did you try:
>
> CC=mpicc R CMD INSTALL ....
>
> Choose the mpicc for the mpi flavor you want to use.
>
> Sean
>
>>
>> I've tried using --configure-args to both locations and
>> also named the environment variable path MPI_ROOT
>> to no avail. Would appreciate any trailheads.
>>
>> As a temp solution exploring SNOW with sockets
>> to speed up bootstraps.  Should I expect see a speed improvement
>> with MPI or PVM on a SMP machine?
>>
>> TIA,
>>
>> V.
>>
>> --
>> Vince Fulco, CFA, CAIA
>> 612.424.5477 (universal)
>> vfulco1 at gmail.com
>>
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>
>



-- 
Vince Fulco, CFA, CAIA
612.424.5477 (universal)
vfulco1 at gmail.com