[R-sig-Geo] gdal error

[Roger Bivand]

On Tue, 19 Jan 2021, Nicolas Saby wrote:

>> library(rgdal)
> Le chargement a nécessité le package : sp
> rgdal: version: 1.5-19, (SVN revision 1092)
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
> Path to GDAL shared files: /usr/share/gdal
> GDAL binary built with GEOS: TRUE
> Loaded PROJ runtime: Rel. 6.3.1, February 10th, 2020, [PJ_VERSION: 631]
> Path to PROJ shared files: /usr/share/proj
> Linking to sp version:1.4-4
> To mute warnings of possible GDAL/OSR exportToProj4() degradation,
> use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.
>
> ----------------
> I have uninstall and reinstall proj, sf and rgdal
>
> But it is still not possible to pick up the latest version of PROJ... 
> should be 7.2 instead of 6.3

The sf README contains some install instructions:

https://github.com/r-spatial/sf

Possibly you are not using ubuntugis-unstable? I only ever install from 
source, to keep control of what I actually have installed, but both PROJ 
and GDAL now take much longer to compile.

Roger

>
> Thanks
>
> -----Message d'origine-----
> De : Nicolas Saby
> Envoyé : mardi 19 janvier 2021 11:25
> À : 'Roger.Bivand using nhh.no' <Roger.Bivand using nhh.no>
> Cc : r-sig-geo using r-project.org
> Objet : RE: [R-sig-Geo] gdal error
>
> Yes, thanks it clarifies.
> I need now to find how to uninstall the older version of proj-bin I have already tried sudo apt remove package_name but it did not fixed the pb Many thanks
>
> -----Message d'origine-----
> De : Roger Bivand <Roger.Bivand using nhh.no> Envoyé : mardi 19 janvier 2021 10:17 À : Nicolas Saby <nicolas.saby using inrae.fr> Cc : r-sig-geo using r-project.org Objet : Re: [R-sig-Geo] gdal error
>
> On Tue, 19 Jan 2021, Nicolas Saby wrote:
>
>> Dear all,
>>
>> I recently updated my  linux system. I am running R 4.0.3
>>
>> Since this update, I get this error with the CRS function:
>>
>> CRS(SRS_string='EPSG:4326')
>> proj_create: SQLite error on SELECT name, type,
>> coordinate_system_auth_name, coordinate_system_code, datum_auth_name,
>> datum_code, area_of_use_auth_name, area_of_use_code, text_definition,
>> deprecated FROM geodetic_crs WHERE auth_name = ? AND code = ?: no such
>> column: area_of_use_auth_name
>> proj_create: SQLite error on SELECT name, type,
>> coordinate_system_auth_name, coordinate_system_code, datum_auth_name,
>> datum_code, area_of_use_auth_name, area_of_use_code, text_definition,
>> deprecated FROM geodetic_crs WHERE auth_name = ? AND code = ?: no such
>> column: area_of_use_auth_name Error in CRS(SRS_string = "EPSG:4326") :
>> NA
>>
>> I checked the proj package with the command apt-cache show proj-bin, I
>> got this. I think I have 2 packages installed
>
> With only 7.2.1 installed, I see:
>
>> library(sp)
>> CRS(SRS_string='EPSG:4326')
> CRS arguments: +proj=longlat +datum=WGS84 +no_defs
>> cat(wkt(CRS(SRS_string='EPSG:4326')), "\n")
> GEOGCRS["WGS 84 (with axis order normalized for visualization)",
>     DATUM["World Geodetic System 1984",
>         ELLIPSOID["WGS 84",6378137,298.257223563,
>             LENGTHUNIT["metre",1]],
>         ID["EPSG",6326]],
>     PRIMEM["Greenwich",0,
>         ANGLEUNIT["degree",0.0174532925199433],
>         ID["EPSG",8901]],
>     CS[ellipsoidal,2],
>         AXIS["geodetic longitude (Lon)",east,
>             ORDER[1],
>             ANGLEUNIT["degree",0.0174532925199433,
>                 ID["EPSG",9122]]],
>         AXIS["geodetic latitude (Lat)",north,
>             ORDER[2],
>             ANGLEUNIT["degree",0.0174532925199433,
>                 ID["EPSG",9122]]]]
>
> You are probably right that your two proj-bin (and other proj) ununtu packages are confusing each other. There should be one only, and rgdal (and sf) should be re-installed from source to pick up the correct unique version.
>
> Hope this clarifies,
>
> Roger
>
>>
>> Package: proj-bin
>> Source: proj
>> Priority: optional
>> Section: science
>> Installed-Size: 470
>> Maintainer: Debian GIS Project
>> <pkg-grass-devel using lists.alioth.debian.org>
>> Architecture: amd64
>> Version: 7.2.0-1~focal0
>> Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libproj19 (>= 7.2.0), libstdc++6 (                >= 5.2)
>> Filename: pool/main/p/proj/proj-bin_7.2.0-1~focal0_amd64.deb
>>
>> Package: proj-bin
>> Architecture: amd64
>> Version: 6.3.1-1
>> Priority: extra
>> Section: universe/science
>> Source: proj
>> Origin: Ubuntu
>> Maintainer: Ubuntu Developers <ubuntu-devel-discuss using lists.ubuntu.com>
>> Original-Maintainer: Debian GIS Project <pkg-grass-devel using lists.alioth.debian.org                                                                             >
>> Bugs: https://bugs.launchpad.net/ubuntu/+filebug
>> Installed-Size: 319
>> Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libproj15 (>= 6.2.1), libstdc++6 (                >= 5.2)
>> Filename: pool/universe/p/proj/proj-bin_6.3.1-1_amd64.deb
>> Task: ubuntustudio-video, ubuntustudio-publishing, ubuntustudio-photography, ubu                                                                             ntustudio-graphics
>>
>>
>> Thank you
>> Nicolas
>>
>> [Logo-Signature-INRAE]
>>
>> Bdat.gissol.fr
>>
>> Nicolas Saby
>> Chef de projet en information statistique
>> https://orcid.org/0000-0001-8964-1194
>>
>>
>>
>
> --
> Roger Bivand
> Department of Economics, Norwegian School of Economics, Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
> https://orcid.org/0000-0003-2392-6140
> https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>

-- 
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
https://orcid.org/0000-0003-2392-6140
https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en