[R-sig-Geo] rgdal 1.5-8 released on CRAN

Sat May 30 02:27:02 CEST 2020

My problems of install of sf and dependencies were fixed by rgdal-1.5-9 and
additionally
upgrading lwgeom and all other dependencies. Thank you all for your efforts
and I am
in ubuntu 20.04.

On Fri, May 29, 2020 at 5:57 PM chris english <englishchristophera using gmail.com>
wrote:

> And not desiring to muddy Thiago's clear waters, but when is Proj7*
> transition expected?
>
> Chris
>
> On Fri, May 29, 2020 at 5:46 PM Roy Mendelssohn - NOAA Federal via
> R-sig-Geo <r-sig-geo using r-project.org> wrote:
>
>> I just tried using the Anaconda setup  Mine dies on not being able to
>> find “projects.h”.
>>
>> > inverser.c:5:10: fatal error: 'projects.h' file not found
>> > #include <projects.h>
>> >          ^~~~~~~~~~~~
>>
>>
>> Doing internet searches,  for PROJ6 and beyond,  this was made private,
>> and is not suppose to be for public linking, see:
>>
>> https://github.com/OSGeo/PROJ/issues/835 <
>> https://github.com/OSGeo/PROJ/issues/835>
>> https://code.mpimet.mpg.de/boards/1/topics/1184 <
>> https://code.mpimet.mpg.de/boards/1/topics/1184>
>>
>> The discussion in the second one suggests that it should be linking to
>> the public header proj_api.h rather than the private header projects.h.
>> proj_api.h does exist in the installation I have.  Unless there is an easy
>> fix I can do,  more than I want to mess with.
>>
>> -Roy
>>
>>
>>
>> > On May 29, 2020, at 2:25 PM, Thiago V. dos Santos via R-sig-Geo <
>> r-sig-geo using r-project.org> wrote:
>> >
>> > Dear Roger,
>> >
>> > Many thanks for the effort keeping rgdal up-to-date with proj6.
>> >
>> > I'd like to report that I am unable to install rgdal 1.5.8 on my macOS
>> system. I am reporting this error here on the list because I thought it
>> would be the best channel in terms of reaching future users experiencing
>> the same error. Please apologize if my rationale is not right, and ignore
>> this message.
>> >
>> > GDAL was installed via MacPorts and is at its latest version, 3.1.0 (at
>> the time of this writing). Proj6 has also been installed via Macports.
>> >
>> > This is how I am trying to install it:
>> >
>> > export PKG_CONFIG_PATH=/opt/local/lib/proj6/lib/pkgconfig
>> > R
>> > install.packages('rgdal', type="source", configure.args=c(
>> >      '--with-proj-include=/opt/local/lib/proj6/include',
>> >      '--with-proj-lib=/opt/local/lib/proj6/lib'))
>> >
>> > and this is the output I get:
>> >
>> > R version 4.0.0 (2020-04-24) -- "Arbor Day"
>> > Copyright (C) 2020 The R Foundation for Statistical Computing
>> > Platform: x86_64-apple-darwin17.0 (64-bit)
>> >
>> >
>> > R is free software and comes with ABSOLUTELY NO WARRANTY.
>> > You are welcome to redistribute it under certain conditions.
>> > Type 'license()' or 'licence()' for distribution details.
>> >
>> >
>> >   Natural language support but running in an English locale
>> >
>> >
>> > R is a collaborative project with many contributors.
>> > Type 'contributors()' for more information and
>> > 'citation()' on how to cite R or R packages in publications.
>> >
>> >
>> > Type 'demo()' for some demos, 'help()' for on-line help, or
>> > 'help.start()' for an HTML browser interface to help.
>> > Type 'q()' to quit R.
>> >
>> >
>> >> install.packages('rgdal', type="source", configure.args=c(
>> > +      '--with-proj-include=/opt/local/lib/proj6/include',
>> > +      '--with-proj-lib=/opt/local/lib/proj6/lib'))
>> > Installing package into ‘/Users/thiago/Documents/R-packages’
>> > (as ‘lib’ is unspecified)
>> >
>> >
>> >     trying URL '
>> https://cran.r-project.org/src/contrib/rgdal_1.5-8.tar.gz'
>> > Content type 'application/x-gzip' length 2299235 bytes (2.2 MB)
>> > ==================================================
>> > downloaded 2.2 MB
>> >
>> >
>> > * installing *source* package ‘rgdal’ ...
>> > ** package ‘rgdal’ successfully unpacked and MD5 sums checked
>> > ** using staged installation
>> > configure: R_HOME: /Library/Frameworks/R.framework/Resources
>> > configure: CC: /opt/local/bin/gcc
>> > configure: CXX: /opt/local/bin/g++
>> > configure: C++11 support available
>> > configure: rgdal: 1.5-8
>> > checking for /usr/bin/svnversion... yes
>> > configure: svn revision: 990
>> > checking for gdal-config... /opt/local/bin/gdal-config
>> > checking gdal-config usability... yes
>> > configure: GDAL: 3.1.0
>> > checking GDAL version >= 1.11.4... yes
>> > checking GDAL version <= 2.5 or >= 3.0... yes
>> > checking gdal: linking with --libs only... yes
>> > checking GDAL: gdal-config data directory readable... yes
>> > checking GDAL: /opt/local/share/gdal/stateplane.csv readable... yes
>> > configure: pkg-config proj exists, will use it
>> > configure: PROJ version: 6.3.2
>> > configure: proj CPP flags: -DPROJ_H_API -I/opt/local/lib/proj6/include
>> > configure: PROJ LIBS: -L/opt/local/lib/proj6/lib
>> > checking PROJ header API:... proj.h
>> > checking for gcc... /opt/local/bin/gcc
>> > checking whether the C compiler works... yes
>> > checking for C compiler default output file name... a.out
>> > checking for suffix of executables...
>> > checking whether we are cross compiling... no
>> > checking for suffix of object files... o
>> > checking whether we are using the GNU C compiler... yes
>> > checking whether /opt/local/bin/gcc accepts -g... yes
>> > checking for /opt/local/bin/gcc option to accept ISO C89... none needed
>> > checking how to run the C preprocessor... /opt/local/bin/gcc -E
>> > checking for grep that handles long lines and -e... /usr/bin/grep
>> > checking for egrep... /usr/bin/grep -E
>> > checking for ANSI C header files... rm: conftest.dSYM: is a directory
>> > rm: conftest.dSYM: is a directory
>> > yes
>> > checking for sys/types.h... yes
>> > checking for sys/stat.h... yes
>> > checking for stdlib.h... yes
>> > checking for string.h... yes
>> > checking for memory.h... yes
>> > checking for strings.h... yes
>> > checking for inttypes.h... yes
>> > checking for stdint.h... yes
>> > checking for unistd.h... yes
>> > checking proj.h usability... yes
>> > checking proj.h presence... yes
>> > checking for proj.h... yes
>> > checking for proj_context_create in -lproj... no
>> > configure: error: proj_context_create not found in libproj.
>> > ERROR: configuration failed for package ‘rgdal’
>> > * removing ‘/Users/thiago/Documents/R-packages/rgdal’
>> > * restoring previous ‘/Users/thiago/Documents/R-packages/rgdal’
>> >
>> >
>> > The downloaded source packages are in
>> >
>>  ‘/private/var/folders/_z/01gg71zs19g816v6m2dddt8w0000gn/T/RtmpvZAChj/downloaded_packages’
>> > Warning message:
>> > In install.packages("rgdal", type = "source", configure.args =
>> c("--with-proj-include=/opt/local/lib/proj6/include",  :
>> >   installation of package ‘rgdal’ had non-zero exit status
>> >
>> > I found this error to be quite mysterious, and could not find any
>> previous discussion about it.
>> >
>> > Are you familiar with it? Is there any other argument that I can pass
>> to install.packages to solve it?
>> >
>> > Greetings,
>> >  -- Thiago V. dos Santos
>> >
>> > ThiagoDosSantos.com
>> > MudancasClimaticasBrasil.com
>> >
>> >
>> >
>> >
>> >
>> >
>> > On Thursday, May 28, 2020, 08:53:50 AM GMT-3, Roger Bivand <
>> roger.bivand using nhh.no> wrote:
>> >
>> >
>> >
>> >
>> >
>> > With sp 1.4-2 and rgdal 1.5-8, those using GDAL 3 and PROJ 6 (including
>> > users of the CRAN Windows binary when it comes) will be part of the big
>> > migration to WKT2 from Proj4 strings for CRS representation. See
>> >
>> >
>> https://cran.r-project.org/web/packages/rgdal/vignettes/CRS_projections_transformations.html
>> >
>> > or for a better rendering of "\phi" and bib-handling:
>> >
>> >
>> https://rgdal.r-forge.r-project.org/articles/CRS_projections_transformations.html
>> >
>> > for background and https://www.r-spatial.org/r/2020/03/17/wkt.html for
>> the
>> > full sf and sp story.
>> >
>> > You will see lots of warnings, they should grab your attention, that is
>> > what they are for. We need your attention to be as sure as we can be
>> that
>> > your results - if affected by the transition - have been checked by you.
>> >
>> > I plan to flip the warnings to default off from rgdal 1.6-*, and sp
>> 1.5-*.
>> > In some weeks but before flipping the defaults, I'll follow up showing
>> > ways of muting them, but we really need to be confident that this
>> > necessary and future-proofing change isn't silently destroying your
>> work
>> > first. So please don't treat the many warnings as just pesky and
>> nagging -
>> > they are priming your immune system to check for unwanted consequences
>> of
>> > your legacy CRS representation choices.
>> >
>> > I'd also like to thank the maintainers of packages importing
>> > from/depending on sp/rgdal for largely positive responses to issues
>> raised
>> > and emails sent, often less polite than they might have been, but
>> grabbing
>> > attention was more important. From over 70 broken reverse dependency
>> > packages we are now well under 20, and I've contacted all of those,
>> with
>> > only a couple not responding. Edzer has seen similar responsiveness for
>> > the parallel migration of sf.
>> >
>> > Enjoy!
>> >
>> > Roger
>> >
>> > --
>> > Roger Bivand
>> > Department of Economics, Norwegian School of Economics,
>> > Helleveien 30, N-5045 Bergen, Norway.
>> > voice: +47 55 95 93 55; e-mail: Roger.Bivand using nhh.no
>> > https://orcid.org/0000-0003-2392-6140
>> > https://scholar.google.no/citations?user=AWeghB0AAAAJ&hl=en
>> >
>> > _______________________________________________
>> > R-sig-Geo mailing list
>> > R-sig-Geo using r-project.org
>> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>> >
>> > _______________________________________________
>> > R-sig-Geo mailing list
>> > R-sig-Geo using r-project.org
>> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>
>>
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>>
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>

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