[R-sig-Geo] Problems installing rgdal on ubuntu 18.04 from ubuntu-unstable GDAL: 3.0.2 / PROJ version: 6.2.1

[Roger Bivand]

Sorry, no idea, only ever install PROJ and GDAL from source. Multiple PROJ installs? Does rgdal install from R-Forge?


Roger Bivand
Norwegian School of Economics
Bergen, Norway

________________________________
Fra: R-sig-Geo <r-sig-geo-bounces using r-project.org> p� vegne av Tomislav Hengl <tom.hengl using gmail.com>
Sendt: mandag 9. mars 2020, 15.23
Til: r-sig-geo using r-project.org
Emne: [R-sig-Geo] Problems installing rgdal on ubuntu 18.04 from ubuntu-unstable GDAL: 3.0.2 / PROJ version: 6.2.1

I'm trying to install rgdal using ubuntu-unstable. First I do: sudo apt-get install libproj-dev libgdal-dev Then I get 2 different messages depending on the rgdal version: R CMD INSTALL rgdal_1.4-8.tar.gz * installing to library �/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5� * installing *source* package �rgdal� ... ** package �rgdal� successfully unpacked and MD5 sums checked configure: R_HOME: /opt/microsoft/ropen/3.5.1/lib64/R configure: CC: gcc -std=gnu99 configure: CXX: g++ configure: C++11 support available configure: rgdal: 1.4-7 checking for /usr/bin/svnversion... yes configure: svn revision: 845 checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.0.2 checking GDAL version >= 1.11.4... yes checking GDAL version <= 2.5 or >= 3.0... yes checking gdal: linking with --libs only... yes checking GDAL: gdal-config data directory readable... yes checking GDAL: /usr/share/gdal/pcs.csv readable... yes configure: pkg-config proj exists, will use it configure: PROJ version: 6.2.1 configure: Support for PROJ >= 6.0.0 not yet available, deprecated API defined configure: proj CPP flags: -DACCEPT_USE_OF_DEPRECATED_PROJ_API_H configure: PROJ LIBS: -lproj checking PROJ header API:... proj_api.h checking proj_api.h presence and usability... yes checking PROJ version agreement... no configure: error: proj_api.h and pkg-config give different versions ERROR: configuration failed for package �rgdal� * removing �/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5/rgdal� > install.packages("rgdal") Installing package into �/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5� (as �lib� is unspecified) % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1631k 100 1631k 0 0 722k 0 0:00:02 0:00:02 --:--:-- 722k * installing *source* package �rgdal� ... ** package �rgdal� successfully unpacked and MD5 sums checked checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes configure: CC: gcc -std=gnu99 configure: CXX: g++ configure: rgdal: 1.3-3 checking for /usr/bin/svnversion... yes configure: svn revision: 759 checking whether g++ supports C++11 features by default... yes configure: C++11 support available checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.0.2 checking GDAL version >= 1.11.4... yes checking gdal: linking with --libs only... yes checking GDAL: /usr/share/gdal/pcs.csv readable... yes configure: pkg-config proj exists, will use it configure: PROJ version: 6.2.1 checking proj_api.h presence and usability... no configure: error: proj_api.h not found in standard or given locations. ERROR: configuration failed for package �rgdal� * removing �/home/tomislav/R/x86_64-pc-linux-gnu-library/3.5/rgdal� Warning in install.packages : installation of package �rgdal� had non-zero exit status The downloaded source packages are in �/data/RTMP/RtmpZtTz9T/downloaded_packages� pkg-config proj --libs -lproj > devtools::session_info() Session info --------------------------------------------------------------------------------------------------- setting value version R version 3.5.1 (2018-07-02) system x86_64, linux-gnu ui RStudio (1.2.1335) language en_US collate en_US.UTF-8 tz Europe/Amsterdam date 2020-03-09 Packages ------------------------------------------------------------------------------------------------------- package * version date source base * 3.5.1 2018-08-05 local compiler 3.5.1 2018-08-05 local datasets * 3.5.1 2018-08-05 local devtools 1.13.6 2018-06-27 CRAN (R 3.5.1) digest 0.6.18 2018-10-10 CRAN (R 3.5.1) graphics * 3.5.1 2018-08-05 local grDevices * 3.5.1 2018-08-05 local grid 3.5.1 2018-08-05 local lattice 0.20-35 2017-03-25 CRAN (R 3.5.1) memoise 1.1.0 2017-04-21 CRAN (R 3.5.1) methods * 3.5.1 2018-08-05 local RevoUtils * 11.0.1 2018-08-01 local RevoUtilsMath * 11.0.0 2018-08-01 local sp * 1.3-1 2018-06-05 CRAN (R 3.5.1) stats * 3.5.1 2018-08-05 local tools 3.5.1 2018-08-05 local utils * 3.5.1 2018-08-05 local withr 2.1.2 2018-03-15 CRAN (R 3.5.1) I have tried removing all installations of GDAL, proj and QGIS 2x but no luck - always the same problem with "proj_api.h". What are my best options? thank you! _______________________________________________ R-sig-Geo mailing list R-sig-Geo using r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo

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