[R-sig-Geo] cannot install rgdal after updating to fedora32

[Veronica Andreo]

See the attached config.log file

El sáb., 27 jun. 2020 a las 21:29, Veronica Andreo (<veroandreo using gmail.com>)
escribió:

> Hello everyone
>
> I have just updated my system to fedora 32 (which fetched GDAL 3 and PROJ
> 6) and when updating my R packages, I get the following error for rgdal.
> Can someone help me out here? What does it mean that it cannot run C++
> compiled programs?  And do I want to crosscompile?
>
> Thanks much in advance
>
> Vero
>
> ---
>
> install.packages("rgdal")
> Installing package into
> ‘/home/veroandreo/R/x86_64-redhat-linux-gnu-library/3.6’
> (as ‘lib’ is unspecified)
> trying URL 'http://cran.rstudio.com/src/contrib/rgdal_1.5-12.tar.gz'
> Content type 'application/x-gzip' length 2302403 bytes (2.2 MB)
> ==================================================
> downloaded 2.2 MB
>
> * installing *source* package ‘rgdal’ ...
> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> ** using staged installation
> configure: R_HOME: /usr/lib64/R
> configure: CC: gcc -m64
> configure: CXX: g++ -m64 -std=gnu++11
> configure: CXX11 is: g++ -m64, CXX11STD is: -std=gnu++11
> configure: CXX is: g++ -m64 -std=gnu++11
> configure: C++11 support available
> configure: rgdal: 1.5-12
> checking for /usr/bin/svnversion... yes
> configure: svn revision: 1018
> checking for gdal-config... /usr/bin/gdal-config
> checking gdal-config usability... yes
> configure: GDAL: 3.0.4
> checking GDAL version >= 1.11.4... yes
> checking GDAL version <= 2.5 or >= 3.0... yes
> checking GDAL: linking with --libs only... yes
> checking GDAL: gdal-config data directory readable... yes
> checking GDAL: /usr/share/gdal/stateplane.csv readable... yes
> configure: pkg-config proj exists, will use it
> configure: PROJ version: 6.3.2
> configure: PROJ CPP flags: -DPROJ_H_API
> configure: PROJ LIBS: -lproj
> checking PROJ header API:... yes
> checking whether the C++ compiler works... yes
> checking for C++ compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... configure: error: in
> `/home/veroandreo/tmp/Rtmpo7AtPr/R.INSTALL12cc66f8f895/rgdal':
> configure: error: cannot run C++ compiled programs. <<<<--- here
> If you meant to cross compile, use `--host'.
> See `config.log' for more details
> ERROR: configuration failed for package ‘rgdal’
> * removing ‘/home/veroandreo/R/x86_64-redhat-linux-gnu-library/3.6/rgdal’
> * restoring previous
> ‘/home/veroandreo/R/x86_64-redhat-linux-gnu-library/3.6/rgdal’
> Warning in install.packages :
>   installation of package ‘rgdal’ had non-zero exit status
>
> ---
>
> sessionInfo()
> R version 3.6.3 (2020-02-29)
> Platform: x86_64-redhat-linux-gnu (64-bit)
> Running under: Fedora 32 (Thirty Two)
>
> Matrix products: default
> BLAS/LAPACK: /usr/lib64/libopenblas-r0.3.9.so
>
> Random number generation:
>  RNG:     Mersenne-Twister
>  Normal:  Inversion
>  Sample:  Rounding
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] compiler_3.6.3 tools_3.6.3
>

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