[R-sig-Geo] Problem installing rgdal

[Jeremy Kraft]

Hello,

I'm trying to reinstall rgdal, but I have a problem with the sqlite
dependency.
Below is the R output.

Does someone knows how to solve the problem?

Thanks,

Jeremy

-------------------------------------------------------------------------------------------------------------------------------
jeremy using yuri-HP-ProBook-640-G1:/$ R

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
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> install.packages('rgdal')
Installing package into ‘/home/jeremy/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/rgdal_1.3-6.tar.gz'
Content type 'application/x-gzip' length 1666975 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: R_HOME: /usr/lib/R
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: C++11 support available
configure: rgdal: 1.3-6
checking for /usr/bin/svnversion... no
configure: svn revision: 773
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.2.3
checking GDAL version >= 1.11.4... yes
checking gdal: linking with --libs only... no
checking gdal: linking with --libs and --dep-libs... no
/usr/bin/ld: /usr/lib/libgdal.a(genbindataset.o): relocation R_X86_64_32
against `.rodata.str1.8' can not be used when making a PIE object;
recompile with -fPIC
/usr/bin/ld: /usr/lib/libgdal.a(geotiff.o): relocation R_X86_64_32 against
`.rodata.str1.1' can not be used when making a PIE object; recompile with
-fPIC
/usr/bin/ld: /usr/lib/libgdal.a(gff_dataset.o): relocation R_X86_64_32S
against hidden symbol `_ZTV10GFFDataset' can not be used when making a PIE
object

*
* Long list
*
/usr/bin/ld: /usr/lib/libgdal.a(gmlhandler.o): relocation R_X86_64_32
against `.rodata.str1.1' can not be used when making a PIE object;
recompile with -fPIC
/usr/bin/ld: /usr/lib/libgdal.a(ili2handler.o): relocation R_X86_64_32S
against hidden symbol `_ZTV11ILI2Handler' can not be used when making a PIE
object
/usr/bin/ld: /usr/lib/libgdal.a(nashandler.o): relocation R_X86_64_32
against `.rodata.str1.8' can not be used when making a PIE object;
recompile with -fPIC
/usr/bin/ld: /usr/lib/libgdal.a(ntf_codelist.o): relocation R_X86_64_32
against `.rodata.str1.1' can not be used when making a PIE object;
recompile with -fPIC
/usr/bin/ld: /usr/lib/libgdal.a(ntf_estlayers.o): relocation R_X86_64_32S
against hidden symbol `_ZN11OGRNTFLayer12GetLayerDefnEv' can not be used
when making a PIE object
/usr/bin/ld: /usr/lib/libgdal.a(ntf_raster.o): relocation R_X86_64_32S
against hidden symbol `_ZTV17OGRNTFRasterLayer' can not be used when making
a PIE object
/usr/bin/ld: /usr/lib/libgdal.a(ogrmssqlgeometryparser.o): relocation
R_X86_64_32S against `.rodata' can not be used when making a PIE object;
recompile with -fPIC
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: error: ld returned 1 exit status
/usr/bin/ld: /usr/lib/libgdal.a(ogrsqliteapiroutines.o): undefined
reference to symbol 'sqlite3_prepare'
/usr/lib/x86_64-linux-gnu/libsqlite3.so.0: error adding symbols: DSO
missing from command line
collect2: error: ld returned 1 exit status
configure: Install failure: compilation and/or linkage problems.
configure: error: GDALAllRegister not found in libgdal.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/jeremy/R/x86_64-pc-linux-gnu-library/3.4/rgdal’

The downloaded source packages are in
    ‘/tmp/RtmpKSJ85K/downloaded_packages’
Warning message:
In install.packages("rgdal") :
  installation of package ‘rgdal’ had non-zero exit status

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