[R-sig-Geo] rgdal installation on Fedora 28

[Sarah Goslee]

If you read that whole thread, as far as I can tell it's a permissions
error, possibly due to using an external drive.

I can't see how it would apply to installing an R package from /tmp as
root. Other compiled packages install correctly; rgdal is the only one
giving me this error.

Am I missing something in that thread?

Sarah


On Fri, Jun 15, 2018 at 4:31 PM Ista Zahn <istazahn using gmail.com> wrote:

>
> https://askubuntu.com/questions/360329/error-cannot-run-c-compiled-programs-if-you-meant-to-cross-compile-use-host
> might help.
>
> --Ista
>
> On Fri, Jun 15, 2018 at 3:27 PM, Sarah Goslee <sarah.goslee using gmail.com>
> wrote:
> > Hi folks,
> >
> > I updated all of my linux computers to Fedora 28, and now can’t install
> rgdal.
> >
> > I can install sf with no problems, so it doesn't appear to be an issue
> > with GDAL or with proj.
> >
> > I checked with Roger Bivand, the package maintainer, who asked me to
> > confirm whether I could install sf, to make sure it wasn’t a
> > dependency issue, and to post the logs online, then ask on the
> > R-sig-geo mailing list. I’m putting the full problem here, and the
> > abbreviated version on the mailing list.
> >
> > I’d appreciate any thoughts: I rely very heavily on the incredibly
> > useful rgdal package.
> >
> >> sessionInfo()
> > R version 3.5.0 (2018-04-23)
> > Platform: x86_64-redhat-linux-gnu (64-bit)
> > Running under: Fedora 28 (Workstation Edition)
> >
> > Matrix products: default
> > BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
> >
> > locale:
> >  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
> >  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
> >  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
> >  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
> >  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> >
> > loaded via a namespace (and not attached):
> > [1] compiler_3.5.0 tools_3.5.0</code>
> >
> >
> > The install message is:
> >
> > installing *source* package ‘rgdal’ ...
> > ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> > configure: CC: gcc -m64
> > configure: CXX: g++ -m64
> > configure: rgdal: 1.3-2
> > checking for /usr/bin/svnversion... no
> > configure: svn revision: 755
> > checking whether the C++ compiler works... yes
> > checking for C++ compiler default output file name... a.out
> > checking for suffix of executables...
> > checking whether we are cross compiling... configure: error: in
> > `/tmp/RtmpfMGBY5/R.INSTALL66c3b8deddb/rgdal':
> > configure: error: cannot run C++ compiled programs.
> > If you meant to cross compile, use `--host'.
> > See `config.log' for more details
> > ERROR: configuration failed for package ‘rgdal’
> > * removing ‘/usr/lib64/R/library/rgdal’
> > * restoring previous ‘/usr/lib64/R/library/rgdal’
> >
> >
> > The complete information and config.log are posted online at:
> >
> > http://numberwright.com/2018/06/stuck-on-rgdal/
> >
> >
> > Any ideas? Or any other information that would be useful?
> >
> > Thanks!
> > Sarah
> >
> > --
> > Sarah Goslee
> > http://www.functionaldiversity.org
> >
> > _______________________________________________
> > R-sig-Geo mailing list
> > R-sig-Geo using r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>
-- 
Sarah Goslee
http://www.stringpage.com
http://www.sarahgoslee.com
http://www.functionaldiversity.org

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