[R-sig-Geo] error when trying to use RStudio within GRASS
Sarah Goslee
@@r@h@go@lee @ending from gm@il@com
Sun Dec 23 14:06:22 CET 2018
Hi Carlos,
"This error does not show when using R instead of RStudio."
Then you probably need to use RStudio help channels. You *might* get lucky
here, but this is an R help list, not RStudio help.
Sarah
On Sun, Dec 23, 2018 at 7:44 AM Carlos Rodríguez <arrowtado using gmail.com>
wrote:
> Hi guys,
>
> I have the following error when using Rstudio within GRASS 7.2.2
> (stand-alone version) in Windows 10:
>
>
>
> Location Spearfish_60
>
> > points <- readVECT("archsites")
>
> Error in if (get("SYS", envir = .GRASS_CACHE) == "WinNat" && nchar(WN_bat)
> == :
>
> missing value where TRUE/FALSE needed
>
>
> > traceback()
>
> 7: parseGRASS(cmd, legacyExec = legacyExec)
>
> 6: doGRASS(cmd, flags = flags, ..., parameters = parameters, echoCmd =
> echoCmd,
>
> legacyExec = legacyExec)
>
> 5: execGRASS("v.in.ogr", flags = ifelse(ignore.stderr, c("f", "quiet"),
>
> "f"), intern = TRUE, ignore.stderr = ignore.stderr)
>
> 4: .read_vect_non_plugin(vname = vname, layer = layer, type = type,
>
> remove.duplicates = remove.duplicates, ignore.stderr =
> ignore.stderr,
>
> pointDropZ = pointDropZ, driver = driver, with_prj = with_prj,
>
> with_c = with_c)
>
> 3: tryCatchList(expr, classes, parentenv, handlers)
>
> 2: tryCatch({
>
> stopifnot(is.logical(plugin) || is.null(plugin))
>
> stopifnot(is.logical(ignore.stderr))
>
> if (missing(layer))
>
> layer <- "1"
>
> layer <- as.character(layer)
>
> stopifnot(is.logical(with_c))
>
> if (!is.null(driver) && driver == "GRASS")
>
> plugin <- TRUE
>
> if (!requireNamespace("rgdal", quietly = TRUE)) {
>
> stop("rgdal not available")
>
> }
>
> if (is.null(plugin)) {
>
> ogrD <- rgdal::ogrDrivers()$name
>
> plugin <- "GRASS" %in% ogrD
>
> }
>
> if (plugin) {
>
> res <- .read_vect_plugin(vname = vname, layer = layer,
>
> type = type, ignore.stderr = ignore.stderr, pointDropZ =
> pointDropZ,
>
> mapset = mapset)
>
> }
>
> else {
>
> res <- .read_vect_non_plugin(vname = vname, layer = layer,
>
> type = type, remove.duplicates = remove.duplicates,
>
> ignore.stderr = ignore.stderr, pointDropZ = pointDropZ,
>
> driver = driver, with_prj = with_prj, with_c = with_c)
>
> }
>
> }, finally = {
>
> if (get.suppressEchoCmdInFuncOption()) {
>
> tull <- set.echoCmdOption(inEchoCmd)
>
> }
>
> })
>
> 1: readVECT("archsites")
>
>
>
>
>
> This error does not show when using R instead of RStudio. I’ve searched
> around and tried to implement the fixes proposed for similar issues
> (unsuccessfully). I feel that it might be a very simple issue, but I am
> stuck and I will appreciate any help. Here the Sys.getenv() and
> sessionInfo(), in case there are needed.
>
>
>
>
> > Sys.getenv()
>
> __COMPAT_LAYER RunAsAdmin DetectorsWin7
>
> ADSK_CLM_WPAD_PROXY_CHECK FALSE
>
> ALLUSERSPROFILE C:\ProgramData
>
> APPDATA C:\Users\...\AppData\Roaming
>
> CLICOLOR_FORCE 1
>
> CommonProgramFiles C:\Program Files\Common Files
>
> CommonProgramFiles(x86) C:\Program Files (x86)\Common Files
>
> CommonProgramW6432 C:\Program Files\Common Files
>
> COMPUTERNAME
>
> ComSpec C:\WINDOWS\system32\cmd.exe
>
> DISPLAY :0
>
> DriverData C:\Windows\System32\Drivers\DriverData
>
> FP_NO_HOST_CHECK NO
>
> GDAL_DATA C:/Program Files/R/R-3.5.1/library/rgdal/gdal
>
> GEODA_GDAL_DATA C:\Program Files\GeoDa Software\data
>
> GEODA_OGR_DRIVER_PATH C:\Program Files\GeoDa Software
>
> GFORTRAN_STDERR_UNIT -1
>
> GFORTRAN_STDOUT_UNIT -1
>
> GRASS_MESSAGE_FORMAT text
>
> GRASS_PAGER cat
>
> HOME C:/Users/…/Documents
>
> HOMEDRIVE C:
>
> HOMEPATH \Users\...
>
> JRI_HOME
> C:\Users\...\Documents\R\win-library\3.4\rJava\jri
>
> LOCALAPPDATA C:\Users\...\AppData\Local
>
> LOGONSERVER \\...
>
> MSYS2_ENV_CONV_EXCL R_ARCH
>
> NUMBER_OF_PROCESSORS 8
>
> OneDrive C:\Users\...\OneDrive
>
> OS Windows_NT
>
> PATH C:\Program
>
>
> Files\R\R-3.5.1\bin\x64;C:\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;c:\Rtools\gcc-4.6.3\bin;C:\Program
>
> Files (x86)\Intel\iCLS Client\;C:\Program
>
> Files\Intel\iCLS
>
>
> Client\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program
>
> Files\Intel\Intel(R) Management Engine
>
> Components\DAL;C:\Program Files\Intel\Intel(R)
>
> Management Engine Components\IPT;C:\Program
> Files
>
> (x86)\Intel\Intel(R) Management Engine
>
> Components\DAL;C:\Program Files
> (x86)\Intel\Intel(R)
>
> Management Engine Components\IPT;C:\Program
> Files
>
> (x86)\ATI
> Technologies\ATI.ACE\Core-Static;C:\Program
>
> Files\MiKTeX 2.9\miktex\bin\x64\;C:\Program
>
> Files\Git\cmd;C:\Program Files
>
> (x86)\Skype\Phone\;C:\Program
>
> Files\R\R-3.5.1\bin\x64;C:\Program
>
>
> Files\RStudio\bin;C:\WINDOWS\System32\OpenSSH\;C:\Program
>
> Files (x86)\Calibre2\;C:\Program
>
> Files\Intel\WiFi\bin\;C:\Program Files\Common
>
> Files\Intel\WirelessCommon\;C:\Users\...
> \AppData\Local\Microsoft\WindowsApps
>
> PATHEXT
> .COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC
>
> PROCESSOR_ARCHITECTURE AMD64
>
> PROCESSOR_IDENTIFIER Intel64 Family 6 Model 60 Stepping 3,
> GenuineIntel
>
> PROCESSOR_LEVEL 6
>
> PROCESSOR_REVISION 3c03
>
> ProgramData C:\ProgramData
>
> ProgramFiles C:\Program Files
>
> ProgramFiles(x86) C:\Program Files (x86)
>
> ProgramW6432 C:\Program Files
>
> PROJ_LIB C:/Program Files/R/R-3.5.1/library/rgdal/proj
>
> PSModulePath
> C:\WINDOWS\system32\WindowsPowerShell\v1.0\Modules\
>
> PUBLIC C:\Users\Public
>
> R_ARCH /x64
>
> R_COMPILED_BY gcc 4.9.3
>
> R_DOC_DIR C:/PROGRA~1/R/R-35~1.1/doc
>
> R_HOME C:/PROGRA~1/R/R-35~1.1
>
> R_LIBS_USER C:\Program Files\R\R-3.5.1\library
>
> R_MAP_DATA_DIR C:/Program
> Files/R/R-3.5.1/library/maps/mapdata/
>
> R_MAP_DATA_DIR_WORLD C:/Program
> Files/R/R-3.5.1/library/maps/mapdata/
>
> R_USER C:/Users/…/Documents
>
> RCRAN C:\Program Files\R\R-3.5.1\bin\x64
>
> RMARKDOWN_MATHJAX_PATH C:/Program Files/RStudio/resources/mathjax-26
>
> RS_LOCAL_PEER \\.\pipe\30976-rsession
>
> RS_RPOSTBACK_PATH C:/Program Files/RStudio/bin/rpostback
>
> RS_SHARED_SECRET 63341846741
>
> RSTUDIO 1
>
> RSTUDIO_CONSOLE_COLOR 256
>
> RSTUDIO_CONSOLE_WIDTH 80
>
> RSTUDIO_MSYS_SSH C:/Program Files/RStudio/bin/msys-ssh-1000-18
>
> RSTUDIO_PANDOC C:/Program Files/RStudio/bin/pandoc
>
> RSTUDIO_SESSION_PORT 30976
>
> RSTUDIO_USER_IDENTITY …
>
> RSTUDIO_WINUTILS C:/Program Files/RStudio/bin/winutils
>
> SystemDrive C:
>
> SystemRoot C:\WINDOWS
>
> TEMP C:\Users\...\AppData\Local\Temp
>
> TERM xterm-256color
>
> TMP C:\Users\...\AppData\Local\Temp
>
> USERDOMAIN …
>
> USERDOMAIN_ROAMINGPROFILE …
>
> USERNAME …
>
> USERPROFILE C:\Users\...
>
> windir C:\WINDOWS
>
>
>
>
>
> > sessionInfo()
>
> R version 3.5.1 (2018-07-02)
>
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> Running under: Windows >= 8 x64 (build 9200)
>
>
>
> Matrix products: default
>
>
>
> locale:
>
> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> States.1252
>
> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
>
>
> [5] LC_TIME=English_United States.1252
>
>
>
> attached base packages:
>
> [1] stats graphics grDevices utils datasets methods base
>
>
>
> other attached packages:
>
> [1] dbscan_1.1-2 rgdal_1.3-4 geostatsp_1.7.2
> Matrix_1.2-14
>
> [5] raster_2.6-7 maptools_0.9-3 maps_3.3.0
> spatstat_1.56-1
>
> [9] rpart_4.1-13 nlme_3.1-137 spatstat.data_1.3-1
> rgrass7_0.1-10
>
> [13] XML_3.98-1.16 sp_1.3-1
>
>
>
>
>
>
>
> Thanks in advance,
>
>
>
> William
> [[alternative HTML version deleted]]
>
> _______________________________________________
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> R-sig-Geo using r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>
--
Sarah Goslee (she/her)
http://www.sarahgoslee.com
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