[R-sig-Geo] rgdal compile confusion

Mon Aug 20 17:37:38 CEST 2018

It looks like the maintainer of the slackbuild recently downgraded GDAL back to the 2.2.4 version because of the problems with the 2.3.0 release:
  https://urldefense.proofpoint.com/v2/url?u=https-3A__git.slackbuilds.org_slackbuilds_commit_gis_gdal-3Fh-3D14.2-26id-3Dc97bd17ac886c33fb90b3954945e2c3b07907acc&d=DwIGaQ&c=n6-cguzQvX_tUIrZOS_4Og&r=fCPRb7QX-vd5bnO9gIJHCiX852SVUtyYX--xtCKtpfk&m=vscOV_5PwQCvnbNef9uvIzp5QCsmoJ43pg4dGDIoXfM&s=FGqho_qYJ7kdidW3uV6ru6kZrzlMbMBU4ujJC0cq4NY&e=

With the line "The update to version 2.3.0 broke lots of dependent packages that don't use c++11. Sorry!"

I'd recommend you reinstall the newest (2.2.4) slackbuild version of the package, and try rebuilding rgdal while using that. 

On 8/20/18, 11:28 AM, "R-sig-Geo on behalf of Rich Shepard" <r-sig-geo-bounces using r-project.org on behalf of rshepard using appl-ecosys.com> wrote:

    On Mon, 20 Aug 2018, Roger Bivand wrote:

    > And the output of sessionInfo() - we don't know your platform. How was
    > GDAL itself installed: from source or binary? Was that binary built on the
    > same platform? Are there multiple GDAL installations on your system? If
    > so, the configure step may see one version but install sees another.

    Roger,

    > sessionInfo()
    R version 3.5.1 (2018-07-02)
    Platform: i586-slackware-linux-gnu (32-bit)
    Running under: Slackware 14.2

    Matrix products: default
    BLAS: /usr/lib/R/lib/libRblas.so
    LAPACK: /usr/lib/R/lib/libRlapack.so

    locale:
      [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
      [3] LC_TIME=en_US.UTF-8        LC_COLLATE=C
      [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
      [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
      [9] LC_ADDRESS=C               LC_TELEPHONE=C 
    [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

    attached base packages:
    [1] stats     graphics  grDevices utils     datasets  methods   base

    loaded via a namespace (and not attached):
    [1] compiler_3.5.1 tools_3.5.1    tcltk_3.5.1

       gdal is built from source using the SlackBuiilds.org
    <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.slackbuilds.org_&d=DwIGAA&c=n6-cguzQvX_tUIrZOS_4Og&r=YFaRLkcUCdDkLrpTbNOUV9J1CwYBCTMwgm5tdQkRSm4&m=wxTHWsd_1Dg_NP86zMVoYKF9rSG2FjVW_DFJf3-svAU&s=CGzyyiturMPUgBqnwm8a991UlrEj6v7Greh6EUG9L1U&e=> build script.

       gdal-2.3.1 is the only gdal package installed.

       With the upgraded (2.3.0 -> 2.3.1) gdal version installed fails the same
    way in response to both update.packages() and install.packages('rgdal'):

    > install.packages('rgdal')
    trying URL 'https://urldefense.proofpoint.com/v2/url?u=https-3A__ftp.osuosl.org_pub_cran_src_contrib_rgdal-5F1.3-2D4.tar.gz&d=DwIGAA&c=n6-cguzQvX_tUIrZOS_4Og&r=YFaRLkcUCdDkLrpTbNOUV9J1CwYBCTMwgm5tdQkRSm4&m=wxTHWsd_1Dg_NP86zMVoYKF9rSG2FjVW_DFJf3-svAU&s=FgWPmtd9KO4To56icX1JJSQCZ8DGlUHxUCdkHjzY7X0&e='
    Content type 'application/x-gzip' length 1664774 bytes (1.6 MB)
    ==================================================
    downloaded 1.6 MB

    * installing *source* package ¡rgdal¢ ...
    ** package ¡rgdal¢ successfully unpacked and MD5 sums checked
    configure: R_HOME: /usr/lib/R
    configure: CC: gcc
    configure: CXX: g++
    configure: C++11 support available
    configure: rgdal: 1.3-4
    checking for /usr/bin/svnversion... yes
    configure: svn revision: 766
    checking for gdal-config... /usr/bin/gdal-config
    checking gdal-config usability... yes
    configure: GDAL: 2.3.1
    checking C++11 support for GDAL >= 2.3.0... yes
    checking GDAL version >= 1.11.4... yes
    checking gdal: linking with --libs only... no
    checking gdal: linking with --libs and --dep-libs... no
    In file included from /usr/include/gdal.h:45:0,
                      from gdal_test.cc:1:
    /usr/include/cpl_port.h:187:6: error: #error Must have C++11 or newer.
      #    error Must have C++11 or newer.
           ^
    In file included from /usr/include/gdal.h:49:0,
                      from gdal_test.cc:1:
    /usr/include/cpl_minixml.h:202:47: error: expected template-name before '<' token
      class CPLXMLTreeCloser: public std::unique_ptr<CPLXMLNode, CPLXMLTreeCloserDeleter>
                                                    ^
    /usr/include/cpl_minixml.h:202:47: error: expected '{' before '<' token
    /usr/include/cpl_minixml.h:202:47: error: expected unqualified-id before '<' token
    In file included from /usr/include/ogr_api.h:45:0,
                      from /usr/include/gdal.h:50,
                      from gdal_test.cc:1:
    /usr/include/ogr_core.h:79:28: error: expected '}' before end of line
    /usr/include/ogr_core.h:79:28: error: expected declaration before end of line
    In file included from /usr/include/gdal.h:45:0,
                      from gdal_test.cc:1:
    /usr/include/cpl_port.h:187:6: error: #error Must have C++11 or newer.
      #    error Must have C++11 or newer.
           ^
    In file included from /usr/include/gdal.h:49:0,
                      from gdal_test.cc:1:
    /usr/include/cpl_minixml.h:202:47: error: expected template-name before '<' token
      class CPLXMLTreeCloser: public std::unique_ptr<CPLXMLNode, CPLXMLTreeCloserDeleter>
                                                    ^
    /usr/include/cpl_minixml.h:202:47: error: expected '{' before '<' token
    /usr/include/cpl_minixml.h:202:47: error: expected unqualified-id before '<' token
    In file included from /usr/include/ogr_api.h:45:0,
                      from /usr/include/gdal.h:50,
                      from gdal_test.cc:1:
    /usr/include/ogr_core.h:79:28: error: expected '}' before end of line
    /usr/include/ogr_core.h:79:28: error: expected declaration before end of line
    configure: Install failure: compilation and/or linkage problems.
    configure: error: GDALAllRegister not found in libgdal.
    ERROR: configuration failed for package ¡rgdal¢
    * removing ¡/usr/lib/R/library/rgdal¢
    * restoring previous ¡/usr/lib/R/library/rgdal¢

    The downloaded source packages are in
     	¡/tmp/RtmpfJQHZG/downloaded_packages¢
    Updating HTML index of packages in '.Library'
    Making 'packages.html' ... done
    Warning message:
    In install.packages("rgdal") :
       installation of package ¡rgdal¢ had non-zero exit status

       What other information can I provide?

    Regards,

    Rich

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