[R-sig-Geo] quadracount on multitype points
Ege Rubak
rubak at math.aau.dk
Wed Sep 13 10:21:27 CEST 2017
Hi Guy,
Maybe your explorative analysis could also benefit from `relrisk` in
case you don't know that function?
It basically gives you a list of smooth images (one for each type) of
the probability that a hypothetical sample at that location is of a
given type. E.g. for the built-in multitype point pattern dataset
`lansing` you would do:
library(spatstat)
prob <- relrisk(lansing, diggle=TRUE)
plot(prob)
This example and more (e.g. a division of the sampling area into subsets
of dominant types) can be found in Chapter 14 of our "spatstat book" if
you need more details (sorry about the shameless self promotion, but I
don't know a better source for this :-)).
Kind regards,
Ege
On 09/13/2017 01:08 AM, Guy Bayegnak wrote:
> Thanks a lot for your response and suggestion Rolf. Yes, by "quadrant" I mean the little sub-windows. My problem is the following:
>
> We have collected thousands of groundwater samples across a vast area, and analysed them. Based on the analysis we are able to assign a "type" to each water sample. When plotted, there seems to be a spatial trend in water type. But a given area may have more than one water type, usually with a dominant type (most frequently occurring). What I am trying to do is identify the dominant type for each sub-region /sub-windows but show the count side by side, for example:
>
> x
> y [0,0.801) [0.801,1.6]
> [0.5,1] Off = 36 Off = 6
> On = 3 On = 39
>
> [0,0.5) Off = 4 Off = 36
> On = 42 On = 6
>
> I think I can achieve what I am looking for with your suggestion. Once I get the table list, I will copy the numbers side by side manually.
>
> Sincerely,
>
> Guy
>
> -----Original Message-----
> From: Rolf Turner [mailto:r.turner at auckland.ac.nz]
> Sent: September 12, 2017 3:45 PM
> To: Guy Bayegnak <Guy.Bayegnak at gov.ab.ca>
> Cc: r-sig-geo at r-project.org; Adrian.Baddeley at curtin.edu.au; Ege Rubak <rubak at math.aau.dk>
> Subject: Re: [R-sig-Geo] quadracount on multitype points
>
>
> On 13/09/17 02:11, Guy Bayegnak wrote:
>
>> Dear all,
>>
>> I am working on a multitype point pattern, and I'd like to estimate
>> how many of each type of point occurs into each quadrant. I know it is
>> possible to use the quandracount on split marks as follows using
>> spatstats: quadratcount(split(marks)). But the result produces as many
>> windows as they are marks. I am wondering is there is a way to know
>> many occurrence of each type there is per quadrant and to plot it in a
>> single grid.
>>
>> Thanks.
>
> You really should start by mentioning that you are dealing with the spatstat package.
>
> It's not clear to me what you are after. A minimal reproducible example would be helpful. I presume that by "quadrant" you mean one of the four equal sub-windows formed by bisecting your (rectangular) window vertically and horizontally.
>
> If my presumption is correct then perhaps
>
> lapply(split(X),quadratcount,nx=2)
>
> (where "X" is your point pattern) does what you want. E.g.:
>
>> lapply(split(amacrine),quadratcount,nx=2)
>> $off
>> x
>> y [0,0.801) [0.801,1.6]
>> [0.5,1] 36 36
>> [0,0.5) 34 36
>>
>> $on
>> x
>> y [0,0.801) [0.801,1.6]
>> [0.5,1] 35 39
>> [0,0.5) 42 36
>
> Is this something like what you wish to achieve?
>
> cheers,
>
> Rolf Turner
>
> --
> Technical Editor ANZJS
> Department of Statistics
> University of Auckland
> Phone: +64-9-373-7599 ext. 88276
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