[R-sig-Geo] Errors at installing rgdal on Debian Buster

[Edzer Pebesma]

How did you install gdal and proj on that machine?

On 12/09/17 09:10, Agustin Lobo wrote:
> Thanks,
> 
> As indicated, I do:
> $ R CMD INSTALL rgdal_1.2-8.tar.gz 2>&1 | tee rgdal.log
> 
> The whole output is here:
> https://drive.google.com/open?id=0B_LsZU5NlOztb0ZYQzZZRDQ0WkU
> 
> The problem starts at:
> 
> configure: PROJ.4 version: 4.8.0
> ./configure: line 3725:  8390 Segmentation fault      ./proj_conf_test
> checking PROJ.4: epsg found and readable... yes
> ./configure: line 3800:  8399 Segmentation fault      ./proj_conf_test
> checking PROJ.4: conus found and readable... yes
> configure: Package CPP flags:  -I/usr/include/gdal
> configure: Package LIBS:  -L/usr/lib -lgdal -lproj
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/gdal
> -I"/home/alobo/R/i686-pc-linux-gnu-library/3.3/sp/include"   -fpic  -g
> -O2 -fdebug-prefix-map=/build/r-base-yDv1ct/r-base-3.3.3=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g  -c OGR_write.cpp -o OGR_write.o
> In file included from /usr/include/gdal/ogr_feature.h:35:0,
>                  from /usr/include/gdal/ogrsf_frmts.h:35,
>                  from OGR_write.cpp:2:
> /usr/include/gdal/ogr_featurestyle.h:264:17: warning: override
> controls (override/final) only available with -std=c++11 or
> -std=gnu++11
>      GBool Parse() CPL_OVERRIDE;
> 
> I'm totally clueless...
> 
> Agus
> 
> On Fri, Sep 8, 2017 at 4:00 PM, Roger Bivand <Roger.Bivand at nhh.no> wrote:
>> Please use the command line: R CMD INSTALL <tarball>  and pipe the output (tee) 2>&1 to a file. Please do not post the file, read it to find the root cause. Almost certainly the installed GDAL ha different assumptions about the g++ compiler than R itself, so you may need to install GDAL and R from source. There have been unclear reports of issues with -std=.
>>
>> Hope this helps,
>>
>> Roger
>>
>> Roger Bivand
>> Norwegian School of Economics
>> Bergen, Norway
>>
>>
>>
>> Fra: Agustin Lobo
>> Sendt: fredag 8. september, 14.49
>> Emne: [R-sig-Geo] Errors at installing rgdal on Debian Buster
>> Til: r-sig-geo
>>
>>
>> I get lots of errors at installing rgdal on a recently upgraded machine to Debian Buster and R3.3.3 There are so many errors that I cannot scroll up enough as to get where the errors actually start and report. Is there any way to save the output of install.packages("rgdal") ? Any other reports on problems installing rgdal on Debian Buster ? Thanks Agus _______________________________________________ R-sig-Geo mailing list R-sig-Geo at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>>
>>
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>>
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-- 
Edzer Pebesma
Institute for Geoinformatics  (ifgi),  University of Münster
Heisenbergstraße 2, 48149 Münster, Germany; +49 251 83 33081
Journal of Statistical Software:   http://www.jstatsoft.org/
Computers & Geosciences:   http://elsevier.com/locate/cageo/

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