[R-sig-Geo] rgdal 1.1-3 compilation: error of ogrsource.cpp
Bede-Fazekas Ákos
bfalevlist at gmail.com
Sat Jan 30 14:51:12 CET 2016
Dear List,
please let me know what I'm doing wrong. Installing package rgdal 1.1-3
with install.packages("rgdal") fails on Ubuntu 14 (gdal version: 2.0.0)
with this error message during the compilation:
*ogrsource.cpp:413:10: error: ‘OFTInteger64’ was not declared in this
scope.*
The gdal-version info, verbose output of package installation and
sessionInfo() is provided after my signature.
However the R version is the latest (3.2.3), installation of the package
failed with similar error message on my previously used R version
(3.0.2), and therefore I think that the problem is nothing to do with R.
Removing and reinstalling libgdal1-dev, libproj-dev, gdal-bin does not
solve the problem. Running R as root user produce similar error.
Any help is gratefully appreciated,
Ákos Bede-Fazekas
Hungarian Academy of Sciences
----------------
gdal-config --version
2.0.0
ogr2ogr --version
GDAL 2.0.0dev, released 2014/04/16
----------------
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 1.1-3
checking for /usr/bin/svnversion... yes
configure: svn revision: 594
checking for gdal-config... /usr/local/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.0.0
checking GDAL version >= 1.6.3... yes
configure: experimental conditional use of GDAL2
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking gdal: linking with --libs only... yes
checking GDAL: /usr/local/share/gdal/pcs.csv readable... yes
checking proj_api.h usability... yes
checking proj_api.h presence... yes
checking for proj_api.h... yes
checking for pj_init_plus in -lproj... yes
configure: PROJ.4 version: 4.8.0
checking PROJ.4: epsg found and readable... yes
checking PROJ.4: conus found and readable... yes
configure: Package CPP flags: -I/usr/local/include
configure: Package LIBS: -L/usr/local/lib -lgdal -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c OGR_write.cpp -o
OGR_write.o
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gdal-bindings.cpp -o
gdal-bindings.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c local_stubs.c -o
local_stubs.o
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ogr_geom.cpp -o ogr_geom.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ogr_polygons.c -o
ogr_polygons.o
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ogr_proj.cpp -o ogr_proj.o
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ogrdrivers.cpp -o
ogrdrivers.o
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I/usr/local/include
-I"/usr/local/lib/R/site-library/sp/include" -fpic -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ogrsource.cpp -o
ogrsource.o
ogrsource.cpp: In function ‘SEXPREC* ogrReadColumn(OGRLayer*, SEXP, int,
int)’:
ogrsource.cpp:413:10: error: ‘OFTInteger64’ was not declared in this scope
case OFTInteger64:
^
ogrsource.cpp:470:12: error: ‘OFTInteger64’ was not declared in this scope
case OFTInteger64:
^
ogrsource.cpp:476:45: error: ‘class OGRFeature’ has no member named
‘GetFieldAsInteger64’
GIntBig nVal64 = poFeature->GetFieldAsInteger64(iField);
^
ogrsource.cpp: In function ‘SEXPREC* ogrReadListColumn(OGRLayer*, SEXP,
int, int, int)’:
ogrsource.cpp:575:10: error: ‘OFTInteger64List’ was not declared in this
scope
case OFTInteger64List:
^
ogrsource.cpp:618:14: error: ‘OFTInteger64List’ was not declared in this
scope
case OFTInteger64List:
^
ogrsource.cpp:619:28: error: ‘union OGRField’ has no member named
‘Integer64List’
nlist = psField->Integer64List.nCount;
^
ogrsource.cpp:626:32: error: ‘union OGRField’ has no member named
‘Integer64List’
psField->Integer64List.paList[k]);
^
ogrsource.cpp:629:43: error: ‘union OGRField’ has no member named
‘Integer64List’
GIntBig nVal64 = psField->Integer64List.paList[k];
^
make: *** [ogrsource.o] Error 1
ERROR: compilation failed for package ‘rgdal’
* removing ‘/usr/local/lib/R/site-library/rgdal’
The downloaded source packages are in
‘/tmp/RtmpcN1Gpn/downloaded_packages’
Warning message:
In install.packages("rgdal") :
installation of package ‘rgdal’ had non-zero exit status
----------------
> sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.3 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.2.3
More information about the R-sig-Geo
mailing list