[R-sig-Geo] Links to Zika virus paper

[boB Rudis]

Agreed it was great to see "Each of the 300 individual models was
fitted using the gbm.step subroutine in the dismo package in the R
statistical programming environment (Elith et al. 2008)" in there and
also agreed that the following should have made it into the citations
(assuming only library(dismo) was done which is a terrible assumption
:-). Many thanks to Roger, Edzer (et al) as well. Critial,
foundational work which made this paper possible.

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2016},
  url = {https://www.R-project.org/},
}
@Manual{R-dismo,
  title = {dismo: Species Distribution Modeling},
  author = {Robert J. Hijmans and Steven Phillips and John Leathwick
and Jane Elith},
  year = {2015},
  note = {R package version 1.0-12},
  url = {https://CRAN.R-project.org/package=dismo},
}
@Manual{R-raster,
  title = {raster: Geographic Data Analysis and Modeling},
  author = {Robert J. Hijmans},
  year = {2015},
  note = {R package version 2.5-2},
  url = {https://CRAN.R-project.org/package=raster},
}
@Manual{R-sp,
  title = {sp: Classes and Methods for Spatial Data},
  author = {Edzer Pebesma and Roger Bivand},
  year = {2015},
  note = {R package version 1.2-1},
  url = {https://CRAN.R-project.org/package=sp},
}

On Thu, Apr 21, 2016 at 4:43 AM, Barry Rowlingson
<b.rowlingson at lancaster.ac.uk> wrote:
> On Thu, Apr 21, 2016 at 8:19 AM, Roger Bivand <Roger.Bivand at nhh.no> wrote:
>> Why we do what we do:
>>
>> Congratulations to Robert Hijmans and others maintaining the dismo package:
>>
>> https://cran.r-project.org/web/packages/dismo/index.html
>>
>> which is the computational basis for:
>>
>> http://elifesciences.org/content/5/e15272v1
>>
>> and reported on in:
>>
>> http://www.bbc.com/news/health-36090650
>
>  Great stuff, but sadly I don't see the either R itself or the dismo
> package cited in the journal article - the one mention of dismo gets a
> reference to a paper (Elith, J., J. R. Leathwick & T. Hastie (2008)  A
> working guide to boosted regression trees. J Anim Ecol, 77, 802-13)
> and nothing else.
>
>   *sigh*
>
> Barry
>
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