[R-sig-Geo] spplot graphics problem
chris english
englishchristophera at gmail.com
Mon Nov 9 10:07:09 CET 2015
Tom,
Take a look at this discussion.
http://r.789695.n4.nabble.com/Compilation-problems-td4695292.html
and try the kpsewhich inconsolata.sty
kpsewhich zi4.sty
But it looks like you need the Ubuntu texinfo package judging from the
config warnings as
X11 is otherwise compiling properly. Which is just to say that a device
might not be
spawned if the 'what is to be rendered' is not render-able, and probably
without
warning. Silent death or sorts.
> dev.list()
X11cairo
2
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.3 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] maptools_0.8-37 maps_3.0.0-2 rgeos_0.3-13 ggplot2_1.0.1
[5] sp_1.2-1 deldir_0.1-9 animation_2.4 data.table_1.9.6
loaded via a namespace (and not attached):
[1] Rcpp_0.12.1 magrittr_1.5 MASS_7.3-44 munsell_0.4.2
[5] colorspace_1.2-6 lattice_0.20-33 stringr_1.0.0 plyr_1.8.3
[9] tcltk_3.2.2 tools_3.2.2 grid_3.2.2 gtable_0.1.2
[13] digest_0.6.8 reshape2_1.4.1 labeling_0.3 stringi_1.0-1
[17] scales_0.3.0 foreign_0.8-66 chron_2.3-47 proto_0.3-10
>
HTH,
Chris
On Sun, Nov 8, 2015 at 6:22 PM, Thomas Adams <tea3rd at gmail.com> wrote:
> Hi Dylan,
>
> I'm using ./configure without any options, installing in /usr/local
>
> teaiii at teaiii-Leopard-WS:~/R-3.2.2$ ./configure
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> checking host system type... x86_64-pc-linux-gnu
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>
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> checking whether the inttypes.h PRIxNN macros are broken... no
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> extern size_t iconv (iconv_t cd, char * *inbuf, size_t
> *inbytesleft, char * *outbuf, size_t *outbytesleft);
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> Finished configuring src/extra/intl directory
>
> using as R_SHELL for scripts ... /bin/bash
> configure: creating ./config.status
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> config.status: creating src/include/config.h
> config.status: executing libtool commands
> config.status: executing stamp-h commands
>
> R is now configured for x86_64-pc-linux-gnu
>
> Source directory: .
> Installation directory: /usr/local
>
> C compiler: gcc -std=gnu99 -g -O2
> Fortran 77 compiler: gfortran -g -O2
>
> C++ compiler: g++ -g -O2
> C++ 11 compiler: g++ -std=c++11 -g -O2
> Fortran 90/95 compiler: gfortran -g -O2
> Obj-C compiler:
>
> Interfaces supported: X11
> External libraries: readline, zlib, lzma, PCRE, curl
> Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU
> Options enabled: shared BLAS, R profiling
>
> Capabilities skipped:
> Options not enabled: memory profiling
>
> Recommended packages: yes
>
> configure: WARNING: you cannot build info or HTML versions of the R manuals
> configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF
> vignettes and package manuals will not be rendered optimally
>
>
> Thanks for looking at this; it's odd...
>
> Tom
>
> On Sun, Nov 8, 2015 at 5:16 PM, Dylan Beaudette <dylan.beaudette at gmail.com
> >
> wrote:
>
> > Hi Tom,
> >
> > I have encountered this in the past when compiling without X11
> > support, thinking that I wouldn't need it on a headless server. Turns
> > out you need X11 (or at least Cairo) for a working graphics device for
> > PNG and JPG formats. Any chance that you can post your configure
> > arguments or build information?
> >
> > Dylan
> >
> > On Sun, Nov 8, 2015 at 2:42 PM, Thomas Adams <tea3rd at gmail.com> wrote:
> > > Edzer,
> > >
> > > That's the problem... dev.list() returns NULL -- I don't understand. I
> > > built R from source and did not see any problems. Any thoughts what I
> > > should look for in building R correctly? I have built R from source
> many
> > > times in the past and I have never encountered this kind of problem.
> > >
> > > Thank you!
> > >
> > > Tom
> > >
> > > On Sun, Nov 8, 2015 at 2:49 PM, Edzer Pebesma <
> > edzer.pebesma at uni-muenster.de
> > >> wrote:
> > >
> > >> Me too.
> > >>
> > >> > dev.list()
> > >> X11cairo
> > >> 2
> > >>
> > >> What is your output of dev.list()? does plot(meuse.sr) work?
> > >>
> > >>
> > >> On 08/11/15 21:45, Tim Appelhans wrote:
> > >> > Hi Tom,
> > >> > on Ubuntu 14.04 I can reproduce fig07.R without any problem
> > >> > my sessionInfo()
> > >> >
> > >> > R version 3.2.2 (2015-08-14)
> > >> > Platform: x86_64-pc-linux-gnu (64-bit)
> > >> > Running under: Ubuntu 14.04.3 LTS
> > >> >
> > >> > locale:
> > >> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=de_DE.UTF-8
> > >> > [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=de_DE.UTF-8
> > >> > LC_MESSAGES=en_US.UTF-8
> > >> > [7] LC_PAPER=de_DE.UTF-8 LC_NAME=C LC_ADDRESS=C
> > >> > [10] LC_TELEPHONE=C LC_MEASUREMENT=de_DE.UTF-8
> > >> > LC_IDENTIFICATION=C
> > >> >
> > >> > attached base packages:
> > >> > [1] stats graphics grDevices utils datasets methods base
> > >> >
> > >> > other attached packages:
> > >> > [1] lattice_0.20-33 sp_1.2-1 gstat_1.1-0
> > >> >
> > >> > loaded via a namespace (and not attached):
> > >> > [1] zoo_1.7-12 tools_3.2.2 xts_0.9-7 spacetime_1.1-4
> > >> > grid_3.2.2 FNN_1.1
> > >> > [7] intervals_0.15.1
> > >> >
> > >> > Cheers
> > >> > Tim
> > >> >
> > >> > On 08.11.2015 21:37, Thomas Adams wrote:
> > >> >> All:
> > >> >>
> > >> >> I was previously able to do the kind of thing I will illustrate
> below
> > >> >> on an
> > >> >> Intel based RedHat Linux system a few years ago. The simple task is
> > to
> > >> >> use
> > >> >> GRASS GIS with R, reading both raster and vector data into R
> through
> > >> >> rgrass7 (previously with spgrass6). Using spplot, display the
> raster
> > and
> > >> >> overlay the vector polygon (a river basin boundary) for reference.
> > As I
> > >> >> said, I have previously done this with success. However, now
> > >> >> overlaying the
> > >> >> vector polygon fails, both with my own data and with the following
> > >> >> example:
> > >> >> http://rspatial.r-forge.r-project.org/gallery/ -- see the example
> > for
> > >> >> fig07.RThe raster data draws, but I get the following...
> > >> >>
> > >> >>> spplot(zn, c("a", "b", "c", "d"),
> > >> >> + names.attr = c("ordinary kriging", "universal kriging with dist
> to
> > >> >> river",
> > >> >> + "stratified kriging with flood freq", "inverse distance"),
> > >> >> + as.table = TRUE, main = "log-zinc interpolation",
> > >> >> + sp.layout = list(rv, scale, text1, text2))
> > >> >>
> > >> >> Warning messages:
> > >> >> 1: In grid.Call.graphics(L_path, x$x, x$y, index, switch(x$rule,
> > >> >> winding =
> > >> >> 1L, :
> > >> >> Path drawing not available for this device
> > >> >> 2: In grid.Call.graphics(L_path, x$x, x$y, index, switch(x$rule,
> > >> >> winding =
> > >> >> 1L, :
> > >> >> Path drawing not available for this device
> > >> >> 3: In grid.Call.graphics(L_path, x$x, x$y, index, switch(x$rule,
> > >> >> winding =
> > >> >> 1L, :
> > >> >> Path drawing not available for this device
> > >> >> 4: In grid.Call.graphics(L_path, x$x, x$y, index, switch(x$rule,
> > >> >> winding =
> > >> >> 1L, :
> > >> >> Path drawing not available for this device
> > >> >>
> > >> >>
> > >> >> I am using Ubuntu 15.10 and R 3.2.2. I have searched the web for
> > others
> > >> >> having this problem to no avail...
> > >> >>
> > >> >> Thank you for your help.
> > >> >>
> > >> >> Best,
> > >> >> Tom
> > >> >>
> > >> >>
> > >> >> --
> > >> >>
> > >> >> [[alternative HTML version deleted]]
> > >> >>
> > >> >> _______________________________________________
> > >> >> R-sig-Geo mailing list
> > >> >> R-sig-Geo at r-project.org
> > >> >> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> > >> >
> > >>
> > >> --
> > >> Edzer Pebesma
> > >> Institute for Geoinformatics (ifgi), University of Münster,
> > >> Heisenbergstraße 2, 48149 Münster, Germany; +49 251 83 33081
> > >> Journal of Statistical Software: http://www.jstatsoft.org/
> > >> Computers & Geosciences: http://elsevier.com/locate/cageo/
> > >> Spatial Statistics Society http://www.spatialstatistics.info
> > >>
> > >>
> > >> _______________________________________________
> > >> R-sig-Geo mailing list
> > >> R-sig-Geo at r-project.org
> > >> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> > >>
> > >
> > >
> > >
> > > --
> > > Thomas E Adams, III
> > > 2330 Jack Warner PKWY, #334
> > > Tuscaloosa, AL 35401
> > >
> > > 1 (513) 739-9512 (cell)
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > _______________________________________________
> > > R-sig-Geo mailing list
> > > R-sig-Geo at r-project.org
> > > https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >
>
>
>
> --
> Thomas E Adams, III
> 2330 Jack Warner PKWY, #334
> Tuscaloosa, AL 35401
>
> 1 (513) 739-9512 (cell)
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> R-sig-Geo mailing list
> R-sig-Geo at r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
>
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