[R-sig-Geo] library fails to load in linux

Rolf Turner r.turner at auckland.ac.nz
Thu Jun 25 00:23:18 CEST 2015


How did you effect the installation command?  Did you use

     install.packages(.....)

from the R command line?  Or did you use a precompiled Ubuntu binary? Or 
....?

When I do

     install.packages("spatstat", <etc.>)

from the R command line, under my antiquated Fedora system, it installs 
with no problems.

Have you tried downloading the tarball and installing from source, i.e.

     R CMD INSTALL spatstat_1.42-1.tar.gz

???

We need more detail.  If there really is a problem, we need to get to 
the bottom of it.

You might possibly get more help on the R-sig-Debian list; please keep 
us informed of developments.

cheers,

Rolf Turner

On 25/06/15 01:39, Harold-Jeffrey Ship wrote:
> I have Ubuntu 12.04 Precise. I just installed R and want to install
> spatstat. This is the R information:
>
> R version 3.2.1 (2015-06-18) -- "World-Famous Astronaut"
> Copyright (C) 2015 The R Foundation for Statistical Computing
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> When I try to install spatstat things look fine at first until it tries to
> verify the installation by loading the library. It crashes, with the below
> error message (snipped).
> Any help would be greatly appreciated!
>
> installing to /home/harold/R/x86_64-pc-linux-gnu-library/3.2/spatstat/libs
> ** R
> ** data
> *** moving datasets to lazyload DB
> ** demo
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> *** stack smashing detected ***: /usr/lib/R/bin/exec/R terminated
> ======= Backtrace: =========
> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x7f3895976e57]
> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x0)[0x7f3895976e20]
> /usr/lib/R/lib/libR.so(+0xc9825)[0x7f3895f11825]
> 	[[alternative HTML version deleted]]



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