[R-sig-Geo] R encounters fatal error in errorsarlm - sdpep package
Philine Gaffron
p.gaffron at tuhh.de
Wed Sep 25 03:12:56 CEST 2013
Hello,
I am trying to run a spatial regression analysis using the errorsarlm
function in the sdpep package. I first ran into memory problems (on a
larger dataset than the one described below) but have adjusted the
memory size limit:
> memory.limit(size = 800000)
[1] 8e+05
However, when I try to execute the following code in R Studio, I
receive the message "R Session aborted - R encountered a fatal error -
The session was terminated"
> ElDU.slm.PM25.white <- errorsarlm(PM_PM25 ~ race_white, data =
> ElDorado_urban, listw=ElDoU_listw)
The data was imported from an ArcGIS shape file:
> Parcels2008_inc_POP <- readOGR(".", "Parcels_2008_inc_pop")
> ElDorado_urban <- subset(Parcels2008_inc_POP, COUNTYFP10 == "017")
The subset contains data from 2081 polygons
The listw object was created as follows:
> Eld_U_coords <- coordinates(ElDorado_urban)
> Eld_U_IDs <- row.names(ElDorado_urban)
> ElDoU_nb <- dnearneigh(Eld_U_coords, d1 = 0, d2 = 492, row.names = Eld_U_IDs)
> ElDoU_listw <- nb2listw(ElDoU_nb, glist=NULL, style="S", zero.policy=NULL)
Is there anything inherent in my approach that could cause this
problem or would one need to look at the data? I include the session
info below.
Thanks for any help,
Philine
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] spdep_0.5-65 Matrix_1.0-12 lattice_0.20-15 rgdal_0.8-11 sp_1.0-13
loaded via a namespace (and not attached):
[1] boot_1.3-9 coda_0.16-1 deldir_0.0-22 grid_3.0.1
LearnBayes_2.12 MASS_7.3-26 nlme_3.1-109 splines_3.0.1
tools_3.0.1
> library(help=spdep)
Information on package ?spdep?
Description:
Package: spdep
Version: 0.5-65
Date: 2013-09-04
--
Philine Gaffron PhD MLA BSc
Fellow of the German Research Foundation (DFG)
Project 'Urban Transport and Environmental Justice'
Visiting Researcher
Institute of Transportation Studies
University of California Davis
p.gaffron at tuhh.de
pgaffron at ucdavis.edu
p.gaffron at tu-harburg.de
www.vsl.tu-harburg.de
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