[R-sig-Geo] Problem in regression kriggin
halim10-fes
halim10-fes at sust.edu
Wed Jan 9 19:26:41 CET 2013
Dear Ashton, Andy and the group,
Thank you very much for your suggestions. Yes, specifying data=data is
throwing the error and
prk.rich<-krige(Richness~Elev, data, newdata=grd, model=fit.sph1)
is not giving that. But regarding your second suggestion to have elevation
covariate at all location on the prediction grid or DEM, I am lost again.
Please help me out. The issue is as follows:
Since I have no DEM at this moment, I have interpolated (ordinary krigging)
the elevation of the whole study area based on 125 plots:
g.sph <- gstat(gelev, id="Elev", model=fit.sph)
p.sph <- predict(g.sph, model=fit.sph, newdata=grd)
a<-(p.sph["Elev.pred"])
library(raster)
raster(a)
s <- as(a, 'SpatialGridDataFrame')
str(s)
Formal class 'SpatialGridDataFrame' [package "sp"] with 4 slots
..@ data :'data.frame': 20212 obs. of 1 variable:
.. ..$ Elev.pred: num [1:20212] 70.3 70.2 70.2 70.2 70.2 ...
..@ grid :Formal class 'GridTopology' [package "sp"] with 3 slots
.. .. ..@ cellcentre.offset: Named num [1:2] 341960 2667253
.. .. .. ..- attr(*, "names")= chr [1:2] "x" "y"
.. .. ..@ cellsize : Named num [1:2] 10 10
.. .. .. ..- attr(*, "names")= chr [1:2] "x" "y"
.. .. ..@ cells.dim : Named int [1:2] 124 163
.. .. .. ..- attr(*, "names")= chr [1:2] "x" "y"
..@ bbox : num [1:2, 1:2] 341955 2667248 343195 2668878
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : chr [1:2] "x" "y"
.. .. ..$ : chr [1:2] "min" "max"
..@ proj4string:Formal class 'CRS' [package "sp"] with 1 slots
.. .. ..@ projargs: chr NA
And then I tried regression krigging as follows:
prk.rich<-krige(Richness~Elev, data, newdata=s, model=fit.sph1)
But it gave me following error:
Error in gstat.formula.predict(d$formula, newdata, na.action = na.action, :
NROW(locs) != NROW(X): this should not occur
In addition: Warning messages:
1: 'newdata' had 20212 rows but variable(s) found have 125 rows
2: 'newdata' had 20212 rows but variable(s) found have 125 rows
I have gone through http://spatial-analyst.net/wiki/index.php?
title=Regression-kriging_guide and other possible different guidelines but
could not come to any conclusion.
Any help is appreciated.
Best regards,
---------------
Md. Abdul Halim
Assistant Professor
Department of Forestry and Environmental Science
Shahjalal University of Science and Technology,Sylhet-3114,
Bangladesh.
Cell: +8801714078386.
alt. e-mail: xou03 at yahoo.com
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