[R-sig-Geo] Rgdal on osx 10.8 (homebrew)

[Massimo Di Stefano]

I tried to untar the rgdal.tar.gz
and rerun the R cMD install command ,

i attached a link to the logs :

http://epi.whoi.edu/esr/errors.txt
http://epi.whoi.edu/esr/configure.ac
http://epi.whoi.edu/config.log


Il 25/11/12 21:03, Massimo Di Stefano ha scritto:
> Hi All,
>
> i'm having trouble trying to build Rgdal from source on mac osx 10.8.x
>
> i have R and gfortran installed using Homebrew.
>
> when i try to build rgdal i got this log :
>
> epi:~ epi$ R CMD INSTALL rgdal_0.7-22.tar.gz
> * installing to library 
> ‘/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library’
> * installing *source* package ‘rgdal’ ...
> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> configure: gdal-config: gdal-config
> checking gdal-config usability... yes
> configure: GDAL: 1.9.2
> checking GDAL version > 1.5.4... yes
> checking for gcc... cc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether cc accepts -g... yes
> checking for cc option to accept ISO C89... none needed
> checking how to run the C preprocessor... cc -E
> checking for grep that handles long lines and -e... /usr/bin/grep
> checking for egrep... /usr/bin/grep -E
> checking for ANSI C header files... rm: conftest.dSYM: is a directory
> rm: conftest.dSYM: is a directory
> yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking gdal.h usability... yes
> checking gdal.h presence... yes
> checking for gdal.h... yes
> checking gdal: linking with --libs only... no
> checking gdal: linking with --libs and --dep-libs... no
> clang: warning: treating 'c' input as 'c++' when in C++ mode, this 
> behavior is deprecated
> gdal_test.c:5:1: error: C++ requires a type specifier for all 
> declarations
> main() {
> ^~~~
> 1 error generated.
> clang: warning: treating 'c' input as 'c++' when in C++ mode, this 
> behavior is deprecated
> gdal_test.c:5:1: error: C++ requires a type specifier for all 
> declarations
> main() {
> ^~~~
> 1 error generated.
> configure: Install failure: compilation and/or linkage problems.
> configure: error: GDALAllRegister not found in libgdal.
> ERROR: configuration failed for package ‘rgdal’
> * removing 
> ‘/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library/rgdal’
> epi:~ epi$
>
>
> have you any clue about it ?
>
> > sessionInfo()
> R version 2.15.2 (2012-10-26)
> Platform: x86_64-apple-darwin12.2.0 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
> >
>
>
> ###
>
>
> epi:~ epi$ gfortran -v
> Using built-in specs.
> COLLECT_GCC=gfortran
> COLLECT_LTO_WRAPPER=/usr/local/Cellar/gfortran/4.7.2/gfortran/libexec/gcc/x86_64-apple-darwin12.2.0/4.7.2/lto-wrapper 
>
> Target: x86_64-apple-darwin12.2.0
> Configured with: ../configure --enable-languages=fortran 
> --prefix=/usr/local/Cellar/gfortran/4.7.2/gfortran 
> --datarootdir=/usr/local/Cellar/gfortran/4.7.2/share 
> --bindir=/usr/local/Cellar/gfortran/4.7.2/bin --with-system-zlib 
> --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr 
> --with-mpc=/usr/local/opt/libmpc --enable-checking=release 
> --disable-stage1-checking --disable-build-poststage1-with-cxx 
> --disable-libstdcxx-pc --disable-nls
> Thread model: posix
> gcc version 4.7.2 (GCC)
> epi:~ epi$
>
>
> Thanks!!!
>
> Massimo.
>
>