[R-sig-Geo] rgeos 0.2-1 released
pgalpern
pgalpern at gmail.com
Tue Jan 17 16:18:06 CET 2012
Roger,
Thanks to all for efforts to improve this very useful package.
I am going to cautiously suggest that the memory leak with
raster::rasterToPolygons(x, dissolve=TRUE) which calls
rgeos::gUnaryUnion() is fixed -- or has improved considerably.
Previously, running this function on a raster of 800 000 cells (which,
as you pointed out in another thread, is at the best of times a memory
intensive task) quickly consumed all the available overhead memory and
headed into disk swapping. Now, I can run the same raster and memory is
consumed up to what appears to be the R gc() trigger point, and then
stabilizes (suggesting that R can now release the memory, which it
previously could not). I should note, however, that 7 GB was freed only
after the R instance was closed. Calls to gc() did not release this.
This may be expected behaviour, not sure.
(Run under 64bit R 2.14.1).
Thanks!
Paul
--
Paul Galpern, PhD Candidate
Natural Resources Institute
70 Dysart Road
University of Manitoba
Winnipeg, Manitoba, Canada R3T 2M6
http://borealscape.ca
> Date: Mon, 16 Jan 2012 14:26:34 +0100 (CET)
> From: Roger Bivand<Roger.Bivand at nhh.no>
> To:r-sig-geo at r-project.org
> Subject: [R-sig-Geo] rgeos 0.2-1 released
> Message-ID:<alpine.LRH.2.02.1201161400310.21470 at reclus.nhh.no>
> Content-Type: TEXT/PLAIN; format=flowed; charset=US-ASCII
>
> Edzer Pebesma and Colin Rundel have made progress with finding and
> removing memory leaks on rgeos, so we've released 0.2-1. It would be
> useful to receive reports on changes in usability. The OSX binary for
> 0.2-1 is already on CRAN Extras, the Windows binary is diffusing across
> CRAN mirrors.
>
> Roger
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