[R-sig-Geo] connection error when calling maxent()

rafael.wueest rafael.wueest at wsl.ch
Wed Jan 4 17:52:36 CET 2012


Hi Folks

when I am trying to call the maxent() function within a function I created,
I am getting the following error:

Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") :
  cannot open file
'/var/folders/ft/fthJYD+6GkCvmcCArZBaQU++waU/-Tmp-/R_raster_tmp/maxent/10943312360/species.lambdas':
No such file or directory

I am here also pasting some output of
>traceback()
7: file(con, "r")
6: readLines(paste(dirout, "/species.lambdas", sep = ""))
5: unlist(readLines(paste(dirout, "/species.lambdas", sep = "")))
4: .local(x, p, ...)
3: maxent(background, occ, args = me.args) at run4models_restios.r#558
...

I am using JGR on a Mac and downloaded the newest dismo (CRAN sources) and
maxent version (see below). 

Can anyone help me? I am happy to provide more detailed information...

Rafa

>maxent()
This is MaxEnt version 3.3.3k

>sessionInfo()
R version 2.12.2 (2011-02-25)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] C

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] gbm_1.6-3.1           survival_2.36-5       gam_1.04.1           
 [4] PresenceAbsence_1.1.5 maptools_0.8-10       lattice_0.19-33      
 [7] foreign_0.8-42        rgdal_0.6-33          dismo_0.7-14         
[10] raster_1.9-13         sp_0.9-84             JGR_1.7-7            
[13] iplots_1.1-4          JavaGD_0.5-4          rJava_0.9-1          

loaded via a namespace (and not attached):
[1] grid_2.12.2  tools_2.12.2
Warning message:
'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible


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