[R-sig-Geo] can't get gstat to work with R 2.14.0 on Mac

[Molly Davies]

Thanks, this worked!
-Molly
On Nov 29, 2011, at 2:55 PM, Jan Verbesselt wrote:

> Also make sure you have the latest R.app 2.14.0 for Mac because there was an issue when installing packages from the R.app (in case you where using this). Please see:
> http://www.mail-archive.com/r-sig-mac@r-project.org/msg00840.html
> 
> 
> On 29/11/2011, at 8:55 PM, Molly Davies wrote:
> 
>> Hello,
>> 
>> I am unable to get gstat to load using R version 2.14.0 (2011-10-31) on platform x86_64-apple-darwin9.8.0/x86_64 (64 bit). The package was working before I updated my R version.
>> 
>> When I tried to load gstat before i had updated it, I got the following error message. (I include this in case there are clues that might indicate the source of my problem).
>>> library(gstat)
>> Loading required package: spacetime
>> Loading required package: xts
>> Error in dyn.load(file, DLLpath = DLLpath, ...) : 
>> unable to load shared object '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/gstat/libs/x86_64/gstat.so':
>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/gstat/libs/x86_64/gstat.so, 6): Library not loaded: @rpath/R.framework/Versions/2.13/Resources/lib/libR.dylib
>> Referenced from: /Library/Frameworks/R.framework/Versions/2.14/Resources/library/gstat/libs/x86_64/gstat.so
>> Reason: image not found
>> In addition: Warning messages:
>> 1: replacing previous import ‘is.projected’ when loading ‘spacetime’ 
>> 2: replacing previous import ‘proj4string’ when loading ‘spacetime’ 
>> 3: replacing previous import ‘proj4string<-’ when loading ‘spacetime’ 
>> Error: package/namespace load failed for ‘gstat’
>> 
>> I assumed this meant I needed to update/reinstall gstat, which I did from the GUI. 
>> 
>>> install.packages("gstat")
>> trying URL 'http://cran.cnr.Berkeley.edu/bin/macosx/leopard/contrib/2.14/gstat_1.0-10.tgz'
>> Content type 'application/x-gzip' length 2888795 bytes (2.8 Mb)
>> opened URL
>> ==================================================
>> downloaded 2.8 Mb
>> 
>> 
>> The downloaded packages are in
>> 	/var/folders/wB/wB-s9onCFfSt45x+FPq9rE+++TI/-Tmp-//Rtmpyy3Pnp/downloaded_packages
>> 
>> Then when I tried to load the library again, I got the following:
>> 
>>> library(gstat)
>> Error in get(Info[i, 1], envir = env) : 
>> internal error -3 in R_decompress1
>> Error: package/namespace load failed for ‘gstat’
>> 
>> I've never seen this error before. 
>> Following the suggestions from a message on R-sig-ME regarding the library lme4a:
>> https://stat.ethz.ch/pipermail/r-sig-mixed-models/2011q3/006399.html
>> (I think it's irrelevant here, but I have Xcode installed.)
>> 
>> 1. I tried installing the package from R-forge (maybe this would be better?)
>>> install.packages("gstat",repos="http://r-forge.r-project.org")
>> Warning message:
>> In getDependencies(pkgs, dependencies, available, lib) :
>> package ‘gstat’ is not available (for R version 2.14.0)
>> 
>> 2. I downloaded the "gstat" packages directly from CRAN and installed from the command line:
>> 
>> Molly$ R CMD INSTALL /Users/Molly/Downloads/gstat_1.0-10.tgz
>> * installing to library ‘/Library/Frameworks/R.framework/Versions/2.14/Resources/library’
>> * installing *binary* package ‘gstat’ ...
>> 
>> * DONE (gstat)
>> 
>> Still no luck. Does anyone have any advice for me as far as how to proceed? I apologize in advance if my problem has already been addressed and I failed to find it in the list archives. If this is the case, I would very much appreciate it if someone could send me a link.
>> 
>> Thanks for your time,
>> 
>> Molly Davies
>> 
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>