[R-sig-Geo] Hosmer-Lemeshow and Le Cessie-van Houwelingen
Komine
momadou at yahoo.fr
Sat Apr 16 23:44:05 CEST 2011
Hi
I would like your help to understand these results of Hosmer-Lemeshow and Le
Cessie-van Houwelingen test. The first invalidate my model and the second
validate it.
reg<-glm(Ignition~FMC,data=Fire,family=binomial)
summary(reg)
Call:
glm(formula = Ignition ~ FMC, family = binomial, data = Fire)
Deviance Residuals:
Min 1Q Median 3Q Max
-2.20116 -0.03811 0.09321 0.31675 2.06383
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 7.29351 1.07182 6.805 1.01e-11 ***
FMC -0.06973 0.01113 -6.266 3.72e-10 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 313.618 on 230 degrees of freedom
Residual deviance: 94.877 on 229 degrees of freedom
AIC: 98.877
Number of Fisher Scoring iterations: 8
The result of the test is:
library(MKmisc)
HLgof.test(fit = fitted(reg), obs = Ignition,X= cbind(FMC))
$C
Hosmer-Lemeshow C statistic
data: fitted(reg) and Ignition
X-squared = 231, df = 8, p-value < 2.2e-16
$H
Hosmer-Lemeshow H statistic
data: fitted(reg) and Ignition
X-squared = 231, df = 8, p-value < 2.2e-16
$gof
le Cessie-van Houwelingen-Copas-Hosmer global goodness of fit test
data: fitted(reg) and Ignition
z = 1.8747, p-value = 0.06084
Messages d'avis :
1: In Ops.factor(1, obs) : - not meaningful for factors
2: In Ops.factor(1, obs) : - not meaningful for factors
1- In case these codes are correct, what is the reason of contradiction
between Hosmer-Lemeshow and Le Cessie-van Houwelingen test?
2- In this case, what is the conclusion: logistic model is validated or
invalidated?
Thanks for your help.
--
View this message in context: http://r-sig-geo.2731867.n2.nabble.com/Hosmer-Lemeshow-and-Le-Cessie-van-Houwelingen-tp6279901p6279901.html
Sent from the R-sig-geo mailing list archive at Nabble.com.
More information about the R-sig-Geo
mailing list