[R-sig-Geo] spgrass6 build error on Mac OS X

Thomas.Adams at noaa.gov Thomas.Adams at noaa.gov
Wed Jan 23 05:28:45 CET 2008


List,

I am attempting to build spgrass6 on MacOS X 10.5.1 (Leopard) on a 2.33. GHz Intel Core Duo MacBook Pro. Using the Mac OS X Cocoa GUI, I am trying to install spgrass6 from source. I have gdal installed fine; when I run gdal-config at a term window prompt, I get:

Macintosh-2:bin teaiii$ gdal-config
Usage: gdal-config [OPTIONS]
Options:
	[--prefix[=DIR]]
	[--libs]
	[--dep-libs]
	[--cflags]
	[--version]
	[--ogr-enabled]
	[--formats]

I have "Install dependencies" checked, so rgdal is downloaded and attempts to build first. (No MacOS X binaries are available). So, I get:

/Library/Frameworks/R.framework/Resources/library
* Installing *source* package 'rgdal' ...
gdal-config: gdal-config
checking for gcc... gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj_api.h usability... yes
checking proj_api.h presence... yes
checking for proj_api.h... yes
checking for pj_init_plus in -lproj... yes
Package CPP flags: -I/usr/local/include
Package LIBS: -L/usr/local/lib -lgdal
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c OGR_write.cpp -o OGR_write.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c gdal-bindings.cpp -o gdal-bindings.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c ogr_geom.cpp -o ogr_geom.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c ogr_proj.cpp -o ogr_proj.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c ogrdrivers.cpp -o ogrdrivers.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c ogrsource.cpp -o ogrsource.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -msse3    -fPIC  -g -O2 -march=nocona -c projectit.cpp -o projectit.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rgdal.so OGR_write.o gdal-bindings.o ogr_geom.o ogr_proj.o ogrdrivers.o ogrsource.o projectit.o -L/usr/local/lib -lgdal -lproj  -F/Library/Frameworks/R.framework/.. -framework R 
** Removing '/Library/Frameworks/R.framework/Resources/library/rgdal'
/usr/bin/libtool: for architecture ppc7400 object: /usr/lib/gcc/i686-apple-darwin8/4.0.1/libstdc++.dylib malformed object (unknown load command 7)
/usr/bin/libtool: for architecture: (null) file: -lstdc++ is not an object file (not allowed in a library)
/usr/bin/libtool: for architecture i386 object: /usr/lib/gcc/i686-apple-darwin8/4.0.1/libstdc++.dylib malformed object (unknown load command 8)
/usr/bin/libtool: for architecture ppc7400 object: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libSystem.dylib malformed object (unknown load command 7)
/usr/bin/libtool: for architecture: (null) file: -lSystem is not an object file (not allowed in a library)
/usr/bin/libtool: for architecture ppc64 object: /usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libSystem.dylib malformed object (unknown load command 7)
make: *** [rgdal.so] Error 1
chmod: /Library/Frameworks/R.framework/Resources/library/rgdal/libs/i386/*: No such file or directory
ERROR: compilation failed for package 'rgdal'

The downloaded packages are in
	/private/var/folders/nB/nBmBWJwdFiCTlNzaoS98rk+++TI/-Tmp-/RtmpYsVNHr/downloaded_packages
/Library/Frameworks/R.framework/Resources/library
* Installing *source* package 'spgrass6' ...
** R
** inst
** preparing package for lazy loading
Loading required package: sp
Loading required package: maptools
Loading required package: foreign
Error: package 'rgdal' required by 'spgrass6' could not be found
Execution halted
ERROR: lazy loading failed for package 'spgrass6'
** Removing '/Library/Frameworks/R.framework/Resources/library/spgrass6'

I'm not sure what to do next. Any suggestions?

Regards,
Tom




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