[R-sig-Geo] Shortest network path distances

Takatsugu Kobayashi tkobayas at indiana.edu
Sun Sep 16 04:59:14 CEST 2007


Dear Dan,

Apologies for not responding quickly.

I will look into Bioconductor. I assume I can easily change the data 
attached to nodes and arcs. I have used R for 1 1/2 years and this 
computing language has grown on me more and more! I migrated from 
Matlab. Now a challenge is how to export network datasets readable into 
Bioconductor...

Thank you very much!!!

Taka

Dan Bebber wrote:
> Dear Taka,
>
> Anything is possible on R!
> I do all my shortest path calculations with RBGL and graph packages from
> Bioconductor.
> RBGL (based on the C++ Boost Graph Library) has several shortest path
> algorithms that perform better on graphs of different types.
> I usually use the johnson.all.pairs.sp() function
> http://www.bioconductor.org/packages/release/GraphsAndNetworks.html
>
>
> Yours,
> Dan Bebber
> _________________________________________
> Dr Daniel P Bebber, MA, DPhil
>  
> Head of Climate Change Research
> Earthwatch Institute
>  
> Junior Research Fellow in Biology
> St. Peter's College, University of Oxford
>  
> Earthwatch Institute (Europe)
> 267 Banbury Road
> Oxford OX2 7HT
> UK
> T. +44(0)1865 318842
> F. +44(0)1865 311383
> dbebber at earthwatch.org.uk
> www.earthwatch.org
>
>
> On Thu, 13 Sep 2007, Takatsugu Kobayashi wrote:
>
>   
>> Hi,
>>
>> I would like to know if there are packages to compute shortest network
>> path distances, something that can be down on TransCAD and ArcGIS
>> network analyst. I have cencus tract centroids and network line
>> shapefiles for 126 US urbanized areas. Basically, I would like to move
>> the census tract centroids a bit to see how much it changes the shortest
>> path distances.
>>     
>
>




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