[R-sig-Geo] [Gstat-info] Re: Problem installing gstat into R

Edzer Pebesma edzer.pebesma at uni-muenster.de
Thu Dec 13 09:41:15 CET 2007


I guess then that is the issue: cygwin is not well supported, or causing 
trouble, for reasons beyond my comprehension. Why not use the standard 
windows distribution?
--
Edzer

Edward Tomlinson schrieb:
> Hi Edzer and Roger,
>  
> The R ./configure was taken from the Installation and Administration 
> manual for installing R on Cygwin.
>  
> i have tried R CMD INSTALL ./gstat_0.9-42.tar.gz with the same result 
> as install.packages.
>  
> Results from session info.
> > sessionInfo()
> R version 2.6.1 (2007-11-26)
> i686-pc-cygwin
>
> locale:
> C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] rcompgen_0.1-17
> >
>  
>
> rgdal loads okay (have not tested for working)
> > library(rgdal)
> Loading required package: sp
> Geospatial Data Abstraction Library extensions to R successfully loaded
> >
>  
> Thank you for helping me with the problem.
>  
> CHeers,
> Ed
>  
> On 12/12/2007, *Roger Bivand* <Roger.Bivand at nhh.no 
> <mailto:Roger.Bivand at nhh.no>> wrote:
>
>     On Wed, 12 Dec 2007, Edzer Pebesma wrote:
>
>     > Edward,
>     >
>     > My experiences here are limited; what I always do to install a
>     source
>     > package is something like:
>     >
>     > R CMD INSTALL -l /home/edzer/S/library R/gstat_0.9-42.tar.gz
>     >
>     > Could you please verify whether that works?
>
>     From the output below, I think that we know too little about the
>     system to
>     call. What does sessionInfo() say inside R? Secondly, why is your
>     ./configure the way it is? Did you make install R itself - it looks as
>     though the R shared objects are not being found. If gstat doesn't
>     install,
>     I'm surprised that rgdal did.
>
>     Roger
>
>     > --
>     > Edzer
>     >
>     > Edward Tomlinson wrote:
>     >> Hi List,
>     >>
>     >> I am not entirely sure where i should be asking this question
>     so i will
>     >> start here.
>     >>
>     >> I am trying to install the gstat package into R so it can be
>     used by a
>     >> component of GRASS.
>     >>
>     >> However i cannot get gstat installed. I have already installed
>     spgrass6
>     >> package and its dependencies, however gstat will not install.
>     Details below.
>     >>
>     >> Any ideas would be appreciated.
>     >>
>     >> Further info...
>     >>
>     >> I downloaded and installed from source. Original files came
>     from CRAN
>     >> website.
>     >>
>     >> I followed instructions from Install and Admin manual. It
>     suggested to build
>     >> in the following way...
>     >>
>     >> ./configure --disable-nls --disable-mbcs --enable-R-shlib
>     >> make
>     >>
>     >> Everything worked fine. I have been able to install other
>     packages for R
>     >> such as maptools, spgrass6 and its dependencies.
>     >>
>     >> Thanks,
>     >> Ed
>     >>
>     >> R version 2.6.1 (2007-11-26)
>     >> Copyright (C) 2007 The R Foundation for Statistical Computing
>     >> ISBN 3-900051-07-0
>     >>
>     >>
>     >>> install.packages("gstat")
>     >>>
>     >> ...
>     >> Content type 'application/x-tar' length 895559 bytes (874 Kb)
>     >> opened URL
>     >> ==================================================
>     >> downloaded 874 Kb
>     >>
>     >> /usr/local/lib/R/library
>     >> * Installing *source* package 'gstat' ...
>     >> ....
>     >> gcc -std=gnu99 -shared -L/usr/local/lib -o gstat.dll block.o
>     chfactor.o
>     >> copy.o d
>     >> ata.o direct.o err.o fit.o getest.o gls.o glvars.o hsehldr.o
>     init.o ivecop.olex
>     >> .o lm.o lufactor.o machine.o mapio.o matop.o matrixio.o
>     meminfo.o memory.omemst
>     >> at.o msim.o norm.o nsearch.o otherio.o parse.o plot.o polygon.o
>     pqueue.opredict
>     >> .o pxop.o qrfactor.o random.o read.o reml.o report.o s.o
>     select.o sem.o
>     >> sim.o so
>     >> lve.o sparse.o sparseio.o spbkp.o spchfctr.o splufctr.o sprow.o
>     spswap.o
>     >> stat.o
>     >> submat.o userio.o utils.o vario.o vario_fn.o vario_io.o vecop.o
>     version.owritec
>     >> md.o xvalid.o   -L/usr/local/lib/R/lib -lR
>     >> s.o: In function `gstat_predict':
>     >> /tmp/R.INSTALL.uA1352/gstat/src/s.c:495: undefined reference to
>     >> `_R_ProcessEvent
>     >> s'
>     >> /tmp/R.INSTALL.uA1352/gstat/src/s.c:517: undefined reference to
>     >> `_R_ProcessEvent
>     >> s'
>     >> Info: resolving _R_NaReal by linking to __imp__R_NaReal
>     (auto-import)
>     >> Info: resolving _R_DimSymbol by linking to __imp__R_DimSymbol
>     (auto-import)
>     >> collect2: ld returned 1 exit status
>     >> make: *** [gstat.dll ] Error 1
>     >> chmod: cannot access `/usr/local/lib/R/library/gstat/libs/*':
>     No such file
>     >> or di
>     >> rectory
>     >> ERROR: compilation failed for package 'gstat'
>     >> ** Removing '/usr/local/lib/R/library/gstat'
>     >>
>     >>
>     >> Warning message:
>     >> In install.packages("gstat") :
>     >>   installation of package 'gstat' had non-zero exit status
>     >>
>     >>
>     >>      [[alternative HTML version deleted]]
>     >>
>     >> _______________________________________________
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>     >>
>     >
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>
>     --
>     Roger Bivand
>     Economic Geography Section, Department of Economics, Norwegian
>     School of
>     Economics and Business Administration, Helleveien 30, N-5045 Bergen,
>     Norway. voice: +47 55 95 93 55; fax +47 55 95 95 43
>     e-mail: Roger.Bivand at nhh.no <mailto:Roger.Bivand at nhh.no>
>
>
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