[R-sig-Geo] [Gstat-info] Re: Problem installing gstat into R
Edzer Pebesma
edzer.pebesma at uni-muenster.de
Thu Dec 13 09:41:15 CET 2007
I guess then that is the issue: cygwin is not well supported, or causing
trouble, for reasons beyond my comprehension. Why not use the standard
windows distribution?
--
Edzer
Edward Tomlinson schrieb:
> Hi Edzer and Roger,
>
> The R ./configure was taken from the Installation and Administration
> manual for installing R on Cygwin.
>
> i have tried R CMD INSTALL ./gstat_0.9-42.tar.gz with the same result
> as install.packages.
>
> Results from session info.
> > sessionInfo()
> R version 2.6.1 (2007-11-26)
> i686-pc-cygwin
>
> locale:
> C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> loaded via a namespace (and not attached):
> [1] rcompgen_0.1-17
> >
>
>
> rgdal loads okay (have not tested for working)
> > library(rgdal)
> Loading required package: sp
> Geospatial Data Abstraction Library extensions to R successfully loaded
> >
>
> Thank you for helping me with the problem.
>
> CHeers,
> Ed
>
> On 12/12/2007, *Roger Bivand* <Roger.Bivand at nhh.no
> <mailto:Roger.Bivand at nhh.no>> wrote:
>
> On Wed, 12 Dec 2007, Edzer Pebesma wrote:
>
> > Edward,
> >
> > My experiences here are limited; what I always do to install a
> source
> > package is something like:
> >
> > R CMD INSTALL -l /home/edzer/S/library R/gstat_0.9-42.tar.gz
> >
> > Could you please verify whether that works?
>
> From the output below, I think that we know too little about the
> system to
> call. What does sessionInfo() say inside R? Secondly, why is your
> ./configure the way it is? Did you make install R itself - it looks as
> though the R shared objects are not being found. If gstat doesn't
> install,
> I'm surprised that rgdal did.
>
> Roger
>
> > --
> > Edzer
> >
> > Edward Tomlinson wrote:
> >> Hi List,
> >>
> >> I am not entirely sure where i should be asking this question
> so i will
> >> start here.
> >>
> >> I am trying to install the gstat package into R so it can be
> used by a
> >> component of GRASS.
> >>
> >> However i cannot get gstat installed. I have already installed
> spgrass6
> >> package and its dependencies, however gstat will not install.
> Details below.
> >>
> >> Any ideas would be appreciated.
> >>
> >> Further info...
> >>
> >> I downloaded and installed from source. Original files came
> from CRAN
> >> website.
> >>
> >> I followed instructions from Install and Admin manual. It
> suggested to build
> >> in the following way...
> >>
> >> ./configure --disable-nls --disable-mbcs --enable-R-shlib
> >> make
> >>
> >> Everything worked fine. I have been able to install other
> packages for R
> >> such as maptools, spgrass6 and its dependencies.
> >>
> >> Thanks,
> >> Ed
> >>
> >> R version 2.6.1 (2007-11-26)
> >> Copyright (C) 2007 The R Foundation for Statistical Computing
> >> ISBN 3-900051-07-0
> >>
> >>
> >>> install.packages("gstat")
> >>>
> >> ...
> >> Content type 'application/x-tar' length 895559 bytes (874 Kb)
> >> opened URL
> >> ==================================================
> >> downloaded 874 Kb
> >>
> >> /usr/local/lib/R/library
> >> * Installing *source* package 'gstat' ...
> >> ....
> >> gcc -std=gnu99 -shared -L/usr/local/lib -o gstat.dll block.o
> chfactor.o
> >> copy.o d
> >> ata.o direct.o err.o fit.o getest.o gls.o glvars.o hsehldr.o
> init.o ivecop.olex
> >> .o lm.o lufactor.o machine.o mapio.o matop.o matrixio.o
> meminfo.o memory.omemst
> >> at.o msim.o norm.o nsearch.o otherio.o parse.o plot.o polygon.o
> pqueue.opredict
> >> .o pxop.o qrfactor.o random.o read.o reml.o report.o s.o
> select.o sem.o
> >> sim.o so
> >> lve.o sparse.o sparseio.o spbkp.o spchfctr.o splufctr.o sprow.o
> spswap.o
> >> stat.o
> >> submat.o userio.o utils.o vario.o vario_fn.o vario_io.o vecop.o
> version.owritec
> >> md.o xvalid.o -L/usr/local/lib/R/lib -lR
> >> s.o: In function `gstat_predict':
> >> /tmp/R.INSTALL.uA1352/gstat/src/s.c:495: undefined reference to
> >> `_R_ProcessEvent
> >> s'
> >> /tmp/R.INSTALL.uA1352/gstat/src/s.c:517: undefined reference to
> >> `_R_ProcessEvent
> >> s'
> >> Info: resolving _R_NaReal by linking to __imp__R_NaReal
> (auto-import)
> >> Info: resolving _R_DimSymbol by linking to __imp__R_DimSymbol
> (auto-import)
> >> collect2: ld returned 1 exit status
> >> make: *** [gstat.dll ] Error 1
> >> chmod: cannot access `/usr/local/lib/R/library/gstat/libs/*':
> No such file
> >> or di
> >> rectory
> >> ERROR: compilation failed for package 'gstat'
> >> ** Removing '/usr/local/lib/R/library/gstat'
> >>
> >>
> >> Warning message:
> >> In install.packages("gstat") :
> >> installation of package 'gstat' had non-zero exit status
> >>
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
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> >> https://stat.ethz.ch/mailman/listinfo/r-sig-geo
> >>
> >
> > _______________________________________________
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> >
>
> --
> Roger Bivand
> Economic Geography Section, Department of Economics, Norwegian
> School of
> Economics and Business Administration, Helleveien 30, N-5045 Bergen,
> Norway. voice: +47 55 95 93 55; fax +47 55 95 95 43
> e-mail: Roger.Bivand at nhh.no <mailto:Roger.Bivand at nhh.no>
>
>
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