<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi,<div class=""><br class=""></div><div class="">I am trying to make a plot similar with the one below, where each sample can be seen well and the branch is coloured.</div><div class="">I tried but can’t get to have the branches coloured , only the tips. I tried edge.color but it does not match the tips…</div><div class="">Also, I have lots of samples but it looks like I just have a few. </div><div class="">Any help will be great, thanks a lot</div><div class=""><br class=""></div><div class="">My code now:</div><div class=""><div class="">tr1 <- nj(xxxx)</div><div class="">plot(tr1,type="u",show.tip.label = F, tip.col=colorings[labs], no.margin=TRUE) ##edge.color=colorings[labs])</div><div class="">tiplabels(pch =21, bg=colorings[labs], cex = 0.7)</div><div class="">legend("topleft",levels(unique(as.factor(labes2))),col=yyyyy[,2],</div><div class=""> pch=15,xpd=TRUE,cex=0.4,xjust=0,yjust=0,ncol=4)</div></div><div class=""><img apple-inline="yes" id="04EBCE78-4677-494A-84A0-05055BE61A22" height="277" width="240" apple-width="yes" apple-height="yes" src="cid:4822CFC5-0525-4C24-A954-FBD5DC45B5AB@codfish" class=""></div></body></html>