[R-sig-Fedora] rstan warning messages
Tom Callaway
tcallawa at redhat.com
Fri Jan 29 21:45:46 CET 2016
On 01/28/2016 09:07 AM, Patrick, Larry B [CSSM] wrote:
> Looks to have libgfortran installed.
> yum list installed | grep libgfortran
> libgfortran.x86_64 4.4.7-16.el6 @rhel-x86_64-server-6
> What else could I check?
>
> Installed libcurl-devel and libidn-devel.
> yum list installed | grep libcurl
> libcurl.x86_64 7.19.7-46.el6 @rhel-x86_64-server-6
> libcurl-devel.x86_64 7.19.7-46.el6 @rhel-x86_64-server-6
> Still getting warning for RCurl.
> 2: In install.packages("rstan", dependencies = TRUE, repos = "http://cran.r-project.org/") : installation of package 'RCurl' had non-zero exit status
> Now this log is way different and I have tried to pick through the warning and error messages.
> Any thoughts here?
RHEL-6 is getting long in the tooth, at almost six years old. It's quite
possible that these R modules are checking for modern dependencies and
not finding them.
That said, something strange is definitely happening here. You're
getting this error message:
No package 'libcurl' found
That normally means that it could not find the pkgconfig file for
'libcurl', but I've pulled down the libcurl-devel package that you
installed and it definitely has:
/usr/lib64/pkgconfig/libcurl.pc
I think the only way I'm going to be able to troubleshoot this is to
bring up a RHEL 6 VM and try it myself.
~tom
==
Red Hat
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