[R-sig-Fedora] tcktk problem with custom R 2.15.0 build on RHEL5
Bruce Pennypacker
bruce.pennypacker at tufts.edu
Mon May 21 22:30:52 CEST 2012
Hi all,
Please bear with me because I'm not all that familiar with R. I manage a
research cluster that's running Red Hat 5.6 (64-bit), and we recently
installed version 2.15.0 of R for some users. Here's how we built it:
./configure --prefix=/opt/shared/R/2.15.0 --with-tcltk --with-system-zlib --with-system-bzlib --with-system-pcre --with-lapack --enable-R-shlib
When we ran "make check-all" it didn't report any obvious problems, and
we successfully installed a number of add-on's from CRAN. But when one
of our users tries to use R with tcltk he runs into a problem:
R version 2.15.0 (2012-03-30)
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)
...
> library("sqldf")
Loading required package: DBI
Loading required package: gsubfn
Loading required package: proto
Loading required namespace: tcltk
Loading Tcl/Tk interface ... done
Loading required package: chron
Loading required package: RSQLite
Loading required package: RSQLite.extfuns
> result<-sqldf("select data.*, meth450part.chromStart as
MethChromStart, meth450part.chromEnd as MethChromEnd, meth450part.strand
as MethStrand, meth450part.name as MethName, meth450part.score as
MethScore from data join meth450part where data.V1=meth450part.chrom and
data.V2<=meth450part.chromStart and data.V3>=meth450part.chromEnd")
Loading required package: tcltk
Error in structure(.External("dotTcl", ..., PACKAGE = "tcltk"), class =
"tclObj") :
[tcl] unknown math function "min".
Can anybody tell me why we're getting this tcl error about the function
"min" not being found? I've been unable to find anything on the web
that relates to this. We're using version 8.14.3 of tcltk (the RedHat
supplied packages).
Thanks,
-Bruce
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