[R-sig-Fedora] problems with rpubchem package on fedora

Andreas andreasbetz at earthlink.net
Sun Nov 28 08:21:01 CET 2010


Hi,
I tried to run rpubchem in R 2-12.0 on Fedora 13, after installing XML and RCurl'.

The sequence of commands were , just following the paper by Rajarshi Guha.

aids <- find.assay.id("lung+cancer+carcinoma")

sapply(aids, function(x) get.assay.desc(x)$assay.desc)

After quite a while the following message was returned:

Warning message:
In download.file(url, destfile = tmpdest, method = "internal", mode = "wb",  :
  RxmlNanoFTPGetConnection: failed to create socket

What is the meaning and how to fix it?

Thank you

Andreas



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