Hi,
Maybe the ritis package does what you want?
Regards,
Kay
Am 11.12.2012 23:46 schrieb "Rich Shepard" <rshepard@appl-ecosys.com>:

> On Mon, 10 Dec 2012, Sarah Goslee wrote:
>
>  ... get.taxonomic() no longer has an outputFile argument.
>>
>
>   I've read the get.taxonomic() description in bio.infer.pdf and it works
> ... to a point. There are 3 taxa currently not in the ITIS database (a
> freshwater worm, a midge, and one chironomid for which I can't track down
> the genus). The first two are going through the validation process and will
> be added to ITIS Real Soon Now. In the meantime, I don't know how to
> proceed. So I've copied Lester Yuan on this message.
>
>   I tell get.taxonomic() that I'm finished editing and it flashes a Tcl/Tk
> window then ists the taxa not in the data base, but does not return the R
> prompt:
>
>  jerall <- get.taxonomic(bioinfer)
>>
> The following taxa are not in ITIS:
> EISENIELLA
> RADOTANYPUS
> ZIATZEVIA
>
>   I've not found a key combination that lets me gracefully exit R (or emacs
> for that matter); I can only kill the process. Nothing I've seen in the
> help
> files appears relevant.
>
>   Any suggestions?
>
> Rich
>
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