[R-sig-eco] Individual based models using R (and netlogo) (IBMS01)

[Oliver Hooker]

Individual based models using R (and netlogo) (IBMS01)

https://www.prstatistics.com/course/individual-based-models-using-r-and-netlogo-ibms01/

This course will be delivered by Dr Aristides (Aris) Moustakas from the
1st - 5th April 2019 in Glasgow City Centre.

Course Overview:
This workshop will provide attendees with the opportunity to learn how (1)
to understand; (2) run simulations of readily available Individual Based
Models (IBMs); (3) analyze the outputs of IBMs; (4) parameterize IBMs, and
(5) code relatively basic IBMs in R and NetLogo.
Examples and applications will include cases from diverse domains and
scientific disciplines such as social sciences, biology, and environmental
sciences.

Intended Audience:
This workshop is ideal for any scientists seeking an introduction as well
as functional use in terms of parameterizing, simulating, and analyzing
outputs of IBMs; some moderate skills of programming and own coding will
also be acquired.
This course will suite attendees from a diverse range of scientific
disciplines such as biology, ecology, psychology, economics, or education.
No prior knowledge of programming in R or Netlogo are required. However
basic to moderate prior R knowledge is required (loading data, loading R
packages, basic R environment and basic R commands).

Course Programme:
Monday `1st – Classes from 09:30 to 17:30
Theory
Differences between statistical modelling and process-based predictive
models
Introduction to cellular automata
Introduction to Individual & Agent Based Models
Practical
Running simulations with readily coded IBMs in Netlogo
Application of cellular automata: coding the game of life in R

Tuesday 2nd – Classes from 09:30 to 17:30
Theory
Introduction to scientific programming
Introduction to Netlogo
Practical
Go through a coded IBM in NetLogo and understand the code
Code IBMs in R (full code provided and explained)
Run simulations of the IBM

Wednesday 3rd – Classes from 09:30 to 17:30
Theory
Complex vs. simple models
How many processes & details to include
Combining IBMs with statistical analysis
Practical
Running simple vs more complex coded IBMs
Exporting outputs from IBMs
Statistical analysis of IBM outputs

Thursday 4th – Classes from 09:00 to 17:00
Theory
Calibrating IBMs
Validating IBMs
Sensitivity of input parameters
Practical
Coding IBMs in R
Analyzing IBM outputs of varying parameter inputs

Friday 5th – Classes from 09:30 to 16:00
Theory
Special topics:
Examples of IBMs across disciplines
IBMs providing new insights & ground-breaking results
Practical
Understanding the description, replicating and coding a journal-published
IBM
Discussions with the tutor and the group of own IBMs and coding

Email oliverhooker using prstatistics.com
Check out our sister sites,
www.PRstatistics.com (Ecology and Life Sciences)
www.PRinformatics.com (Bioinformatics and data science)
www.PSstatistics.com (Behaviour and cognition)

1. January 21st – 25th 2019
STATISTICAL MODELLING OF TIME-TO-EVENT DATA USING SURVIVAL ANALYSIS: AN
INTRODUCTION FOR ANIMAL BEHAVIOURISTS, ECOLOGISTS AND EVOLUTIONARY
BIOLOGISTS (TTED01)
Glasgow, Scotland, Dr. Will Hoppitt
https://www.psstatistics.com/course/statistical-modelling-of-time-to-event-data-using-survival-analysis-tted01/

2. January 21st – 25th 2019
ADVANCING IN STATISTICAL MODELLING USING R (ADVR08)
Glasgow, Scotland, Dr. Luc Bussiere, Dr. Tom Houslay
http://www.prstatistics.com/course/advancing-statistical-modelling-using-r-advr08/

3. January 28th–  February 1st 2019
AQUATIC ACOUSTIC TELEMETRY DATA ANALYSIS AND SURVEY DESIGN
Glasgow, Scotland, VEMCO staff and affiliates
https://www.prstatistics.com/course/aquatic-acoustic-telemetry-data-analysis-atda01/

4. February 4th – 8th 2019
DESIGNING RELIABLE AND EFFICIENT EXPERIMENTS FOR SOCIAL SCIENCES (DRES01)
Glasgow, Scotland, Dr. Daniel Lakens
https://www.psstatistics.com/course/designing-reliable-and-effecient-experiments-for-social-sciences-dres01/

5. February 11th – 15th 2019
REPRODUCIBLE DATA SCIENCE FOR POPULATION GENETICS
Glasgow, Scotland, Dr. Thibaut Jombart, Dr. Zhain Kamvar
https://www.prstatistics.com/course/reproducible-data-science-for-population-genetics-rdpg02/

6. 25th February – 1st March 2019
MOVEMENT ECOLOGY (MOVE02)
Margam Discovery Centre, Wales, Dr. Luca Borger, Prof. Ronny Wilson, Dr
Jonathan Potts
https://www.prstatistics.com/course/movement-ecology-move02/

7. March 4th – 8th 2019
BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS
(BIAC01)
Glasgow, Scotland, Dr. Paul Howden-Leach
https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/

8. March 11th – 15th  2019
ECOLOGICAL NICHE MODELLING USING R (ENMR03)
Glasgow, Scotland, Dr. Neftali Sillero
http://www.prstatistics.com/course/ecological-niche-modelling-using-r-enmr03/

9. March 18th – 22nd 2019
INTRODUCTION TO STATISTICS AND R FOR EVERYONE (IRFE01)
Crete, GREECE, Dr Aristides (Aris) Moustakas
https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe01/

10. March 25th – 29th 2019
LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03)
Glasgow, Scotland, Prof. Rodney Dyer
http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg03/

11. April 1st – 5th 2019
INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01)
Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre
http://www.psstatistics.com/course/introduction-to-statistics-using-r-for-psychologists-ipsy02/

12. April 1st – 5th 2019
INDIVIDUAL BASED MODELS FOR ECOLOGSITS (IBME01)
Glasgow, Scotland, Dr Aristides (Aris) Moustakas
https://www.prstatistics.com/course/individual-based-models-using-r-and-netlogo-ibms01/

13. April 8th – 12th 2019
MACHINE LEARNING (MLUR01)
Glasgow, Scotland, Dr Aristides (Aris) Moustakas
https://www.prstatistics.com/course/machine-learning-using-r-mlur01/

14. April 15th – 19th 2019
INTRODUCTION TO Q GIS AND SPATIAL ANALYSIS WITH R (QGSE01)
Glasgow, Scotland, Dr Luca Nelli
https://www.prstatistics.com/course/introduction-to-gis-and-spatial-analyses-with-r-gisr01/

15. April 22nd – 26th 2019
GIS USING R (GISR)
Glasgow, Scotland, Dr Luca Nelli
https://www.prstatistics.com/course/gis-using-r-gisr01/

16. April 29th – May 3rd 2019
COMPARATIVE GENOMICS (CMGN01)
Glasgow, Scotland, Dr. Fritz Sedlazeck, Dr. Matthias Weissensteiner
https://www.prinformatics.com/course/comparative-genomics-cmgn01/

17. May 6th – 10th 2019
INTRODUCTION TO MULTILEVEL MODELS (MIXED/HIERARCHICAL) FOR PSYCHOLOGISTS
Myuna Bay, AUSTRALIA,  Dr. Sean Murphy
https://www.psstatistics.com/course/an-exploration-of-r-for-psychologists-from-data-handling-to-multilevel-modelling-xplr01/

18. May 16th – 18th 2019 (please note this a 3-day course from Thursday to
Saturday)
AQUATIC MOVEMENT ECOLOGY USING R (AMER01)
Myuna Bay, AUSTRALIA, Dr. Ross Dwyer, Dr. Vinay Udyawer
Link to follow

19. May 16th – 19th 2019 (please note this a 4-day course from Thursday to
Monday)
INTRODUCTION TO R FOR EVERYONE (IRFE02)
Myuna Bay, AUSTRALIA, Dr Aristides (Aris) Moustakas
https://www.prstatistics.com/course/introduction-to-statistics-and-r-for-anyone-irfe02/

20. May 20th – 24th 2019
MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV03)
Myuna Bay, AUSTRALIA, Prof. David Warton
https://www.prstatistics.com/course/model-based-multivariate-analysis-of-abundance-data-using-r-mbmv03/

21. May 21st – 24th 2019
STATISTICAL TOOLKIT FOR ECOLOGISTS (STKE01)
Myuna Bay, AUSTRALIA, Dr Aristides (Aris) Moustakas
https://www.prstatistics.com/course/statistical-toolkit-for-ecologists-stke01/

22. June 10th – 14th 2019
STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04)
Glasgow, Scotland, Dr. Andrew Parnell, Dr. Andrew Jackson
www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/

23. June 17th – 21st 2019
SPATIAL MODELLING AND ANALYSIS OF ADAPTIVE GENOMIC VARIATION (SPGN01)
Glasgow, Dr. Matt Fitzpatrick
https://www.prstatistics.com/course/spatial-modelling-and-analysis-of-adaptive-genomic-variation-spgn01/

24. June 17th – 21st 2019
INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB06)
Glasgow, Scotland, Dr. Martin Jones
http://www.prinformatics.com/course/introduction-to-python-for-biologists-ipyb06/

25. June 24th – 28th 2019
ADVANCED PYTHON FOR BIOLOGISTS (APYB03)
Glasgow, Scotland, Dr. Martin Jones
www.prinformatics.com/course/advanced-python-biologists-apyb03/

26. July 1st – 5th 2019
DATA VISUALISATION AND MANIPULATION USING PYTHON (DVMP01)
Glasgow, Scotland, Dr. Martin Jones
http://www.prinformatics.com/course/data-visualisation-and-manipulation-using-python-dvmp01/

27. July 29th – August 2nd 2019
INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISPE01)
Glasgow, Scotland, Dr. Jakub Nowosad
https://www.prstatistics.com/course/introduction-to-spatial-analysis-of-ecological-data-using-r-ispe01/

28. September 16th – 20th 2019
R PACKAGE DESIGN AND DEVELOPMENT AND REPRODUCIBLE DATA SCIENCE FOR
BIOLOGISTS (RPKG01)
Glasgow, Scotland, Dr. Cory Merow, Dr. Andy Rominger
https://www.prstatistics.com/course/r-package-design-and-development-and-reproducible-data-science-for-biologists-rpkg01/

29. September 30th – October 4th 2019
GEOMETRIC MORPHOMETRICS USING R (GMMR02)
Glasgow, Scotland, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni
Kaliontzopoulou
http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr02/

30. October 7th – 11th 2019
CONSERVATION PLANNING USING PRIORITIZR : FROM THEORY TO PRACTICE (PRTZ01)
Crete, GREECE, Dr Richard Schuster and Nina Morell
https://www.prstatistics.com/course/conservation-planning-using-prioritizr-from-theory-to-practice-prtz01/

31. October 21st – 25th 2019
A COMPLETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL
AUTOCORRELATION) (MMTS01)
Crete, GREECE, Dr Aristides (Aris) Moustakas
https://www.prstatistics.com/course/a-complete-guide-to-mixed-models-including-temporal-and-spatial-autocorrelation-mmts01/

32. November 18th – 22nd 2019
INTRODUCTION TO STRUCTURED POPULATION MODELS AND DEMOGRAPHIC DISTRIBUTION
MODELS (IIPM01)
Crete, GREECE, Dr Cory Merow
https://www.prstatistics.com/course/introduction-to-structured-population-models-and-demographic-distribution-models-iipm01/

33. November 25th – 29th 2019
ADVANCED RANGE, NICHE, AND DISTRIBUTION MODELING (ASDM01)
Crete, GREECE, Dr Cory Merow
https://www.prstatistics.com/course/advanced-range-niche-and-distribution-modeling-asdm01/

-- 
Oliver Hooker PhD.
PR statistics

2018 publications -
Alternative routes to piscivory: Contrasting growth trajectories in brown
trout (Salmo trutta) ecotypes exhibiting contrasting life history
strategies. Ecology of Freshwater Fish.

Phenotypic and resource use partitioning amongst sympatric lacustrine brown
trout, Salmo trutta. Biological Journal of the Linnean Society. DOI
10.1093/biolinnean/bly032

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