[R-sig-eco] permutation test for CCA variables

[Jari Oksanen]

Marc, the source code of those slides is in https://github.com/jarioksa/ordination101/. Look at the source code to see how the slide was generated.

cheers, Jari Oksanen

On 7 Dec 2018, at 09:34, Marc Taylor <marchtaylor using gmail.com<mailto:marchtaylor using gmail.com>> wrote:

Thanks Franz!
cheers, Marc

On Fri, Dec 7, 2018 at 7:44 AM Franz Krah <f.krah using mailbox.org<mailto:f.krah using mailbox.org>> wrote:

Hi Marc,

This is the example in the function envfit:

library(vegan)
data(varespec, varechem)
library(MASS)
ord <- metaMDS(varespec)
(fit <- envfit(ord, varechem, perm = 999))
scores(fit, "vectors")
plot(ord)
plot(fit)

Cheers, Franz


-----------------------------------------------------
Franz-S. Krah (PhD student)
Ecology and Evolution of mushroom-forming fungi

RG Biodiversity of Plants
Technical University of Munich (TUM)
Mobile: 0170 5221189

Website: mycolab.de<http://mycolab.de>
Mail: franz.krah using tum.de<mailto:franz.krah using tum.de>
——————————————————————————

On 7. Dec 2018, at 07:30, Marc Taylor <marchtaylor using gmail.com<mailto:marchtaylor using gmail.com>> wrote:

Hi all,

a quick question: Does anyone know what vegan function was called to
produce the following permutation test in this slide of Jari's:
http://cc.oulu.fi/~jarioksa/opetus/metodi/ordination101.html#44

Cheers,
Marc

[[alternative HTML version deleted]]

_______________________________________________
R-sig-ecology mailing list
R-sig-ecology using r-project.org<mailto:R-sig-ecology using r-project.org>
https://stat.ethz.ch/mailman/listinfo/r-sig-ecology




[[alternative HTML version deleted]]

_______________________________________________
R-sig-ecology mailing list
R-sig-ecology using r-project.org<mailto:R-sig-ecology using r-project.org>
https://stat.ethz.ch/mailman/listinfo/r-sig-ecology


	[[alternative HTML version deleted]]