[R-sig-eco] permutation test for CCA variables

[Franz Krah]

Hi Marc,

This is the example in the function envfit:

library(vegan)
data(varespec, varechem)
library(MASS)
ord <- metaMDS(varespec)
(fit <- envfit(ord, varechem, perm = 999))
scores(fit, "vectors")
plot(ord)
plot(fit)

Cheers, Franz


-----------------------------------------------------
Franz-S. Krah (PhD student)
Ecology and Evolution of mushroom-forming fungi

RG Biodiversity of Plants
Technical University of Munich (TUM)
Mobile: 0170 5221189

Website: mycolab.de <http://mycolab.de/>
Mail: franz.krah using tum.de <mailto:franz.krah using tum.de>
——————————————————————————

> On 7. Dec 2018, at 07:30, Marc Taylor <marchtaylor using gmail.com> wrote:
> 
> Hi all,
> 
> a quick question: Does anyone know what vegan function was called to
> produce the following permutation test in this slide of Jari's:
> http://cc.oulu.fi/~jarioksa/opetus/metodi/ordination101.html#44
> 
> Cheers,
> Marc
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> R-sig-ecology mailing list
> R-sig-ecology using r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-ecology


	[[alternative HTML version deleted]]