[R-sig-eco] Multiple locations with the same coordinates and ltraj
Christina Vedel-Smith
cvs at nathist.dk
Wed May 24 17:22:14 CEST 2017
Hi everyone
I hope one of you can help me because I am stuck :S
I have a data set where I have several locations where the individuals (mice) have stayed exactly in the same spot.
My locations are recorded with approximately 60 mins intervals.
So every location have a unique timestamp but can have the same xy coordinates.
If I remove all the locations with the same coordinates I have no problem running my code but the actual biological information is degraded.
I have attached the file with the data.
My code is:
> library(ctmm)
> library(adehabitatHR)
> workdir="C:\\Users\\Christina\\OneDrive\\Dokumenter\\Telemetri\\Input"
> setwd(workdir)
> microtus <- read.csv2("MiceIn_2008_Data.csv")
> info <- list(projection="+proj=utm+zone=?? + ellps=WGS84 +datum=WGS84",timezone="GMT")
> microtus$timestamp <- as.POSIXct(microtus$Date_Time,tz=info$timezone,"%d-%m-%Y %H:%M")
> microtus$t <- as.numeric(microtus$timestamp)
> Locs_traj = as.ltraj(xy=microtus[ ,3:4], date=microtus$timestamp, id=microtus$ID)
Error in as.ltraj(xy = microtus[, 3:4], date = microtus$timestamp, id = microtus$ID) :
non unique dates for a given burst
Thank you so much
/Christina
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