[R-sig-eco] Phylogenetic analysis on RADseq data with R

[Giulia Valvassori]

Dear all,
I apologise for these simplistic questions.

I need to convert a transposed RADseq matrix of 17744 SNPs in genepop
format using R, does anyone know how to do it?
In addition, i should perform phylogenetic analysis (as in Structure) with
R; i would like to obtain a matrix of genetic distance and then build a
phylogenetic tree, based on which decided which future analyses perform.
Does anyone know which R package can i use?

Thank you in advance!
Giulia

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