[R-sig-eco] error message in package "FD", function dbFD ()
Laura Riggi
laura.riggi at slu.se
Wed Jul 15 15:35:06 CEST 2015
Dear R community,
I have some trouble with the dbFD function in the FD package.
> str(a)
'data.frame': 150 obs. of 48 variables:
> str(x)
'data.frame': 48 obs. of 9 variables:
ex1 <- dbFD(x,a)
Error in dbFD(x, a) :
Species labels in 'x' and 'a' need to be identical and ordered alphabetically (or simply in the same order).
I have checked multiple time the data set but this message keeps on appearing. The names of the species are identical in both data.frames.
I was wondering if you could help me by giving me an example of an excel trait and species matrix table to upload for this package. Below is a snapshop of my data. I have also checked that there are no NA's problems and that there is no species abundance = 0 or no community with 0 species.
Thank you for any advice!
Best
Laura
Species table (a)
Agonum_assimile
Agonum_dorsale
Agonum_gracile
Agonum_gracilipes
2
3
0
0
0
6
0
0
1
10
0
0
1
5
0
0
0
8
0
0
2
7
0
0
1
6
0
0
Trait table(x)
Species
SizeCategoy
Ecology
Reproduction
Diet
Wing
Agonum_assimile
C
nocturnal
spring
Carnivorous
Brachypterous
Agonum_dorsale
B
nocturnal
spring
Carnivorous
Macropterous
Agonum_gracile
B
diurnal
spring
Carnivorous
Macropterous
Agonum_gracilipes
B
both
spring
Carnivorous
Macropterous
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