[R-sig-eco] Issue with ltraj function in R for movement analysis
alittle
alittle139 at gmail.com
Mon Feb 9 16:33:45 CET 2015
One suggestion that I got was to change the date/time column by concatenating
them. I tried this step with little luck. Here's the new R code and example
of my data set structure:
#Load Data for First Passage Time Analysis
data<-read.csv("FPT_Ready_for_R_282015.csv")
head(data)
das <- as.character(data$DateTime)
head(das)
#Use the function strptime (see the help page of this function) to convert
the date in locs into
#a POSIXlt object, as then as.POSIXct to convert it into the class POSIXct:
das <- as.POSIXct(strptime(as.character(data$DateTime),"%M/%dd/%yyyy
%hh:%mm:%ss")) #We can then create an object of class ltraj to store the
animal movements
#Calculate animal movements
datanew <- as.ltraj(xy = data[,c("X","Y")], date = das,id=data$NewID2,
burst=data$NewID2)
datanew
This is the error that I received:
Error in as.ltraj(xy = data[, c("X", "Y")], date = das, id = data$NewID2, :
non unique dates for a given burst
I've searched the data set and cannot find any duplicate values for dates
because I combined both date and time and with the inclusion of the unique
ID I shouldn't have any problems. Any suggestions? Thank you!
ID Group_ID NewID2 DateTime X Y
1401 FR1 1401FR141732 4/3/2014 18:57 111123 1111111
1401 FR1 1401FR141732 4/3/2014 19:37 111126 1111123
1401 FR1 1401FR141732 4/3/2014 19:57 111129 1111135
1401 FR1 1401FR141732 4/3/2014 20:17 111132 1111147
1401 FR1 1401FR141732 4/3/2014 20:37 111135 1111159
1401 FR1 1401FR141732 4/3/2014 20:57 111138 1111171
1401 FR1 1401FR141732 4/3/2014 21:17 111141 1111183
1401 FR1 1401FR141732 4/3/2014 21:37 111144 1111195
1401 FR1 1401FR141732 4/3/2014 21:57 111147 1111207
1401 FR1 1401FR141732 4/3/2014 22:17 111150 1111219
1401 FR1 1401FR141732 4/3/2014 22:37 111153 1111231
1401 FR2 1401FR241765 5/6/2014 19:20 111156 1111243
1401 FR2 1401FR241765 5/6/2014 19:40 111159 1111255
1401 FR2 1401FR241765 5/6/2014 20:00 111162 1111267
1401 FR2 1401FR241765 5/6/2014 20:20 111165 1111279
1401 FR2 1401FR241765 5/6/2014 20:40 111168 1111291
1401 FR2 1401FR241765 5/6/2014 21:01 111171 1111303
1401 FR2 1401FR241765 5/6/2014 21:20 111174 1111315
1401 FR2 1401FR241765 5/6/2014 21:40 111177 1111327
1401 FR2 1401FR241765 5/6/2014 22:01 111180 1111339
1401 FR2 1401FR241765 5/6/2014 22:20 111183 1111351
1401 FR2 1401FR241765 5/6/2014 22:41 111186 1111363
1401 FR2 1401FR241765 5/6/2014 23:26 111189 1111375
1401 FR2 1401FR241765 5/6/2014 23:42 111192 1111387
1401 FR2 1401FR241765 5/6/2014 0:01 111195 1111399
1401 FR2 1401FR241765 5/6/2014 0:20 111198 1111411
1401 FR2 1401FR241765 5/6/2014 1:00 111201 1111423
1401 FR2 1401FR241765 5/6/2014 1:20 111204 1111435
--
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