[R-sig-eco] CAPSCALE plot output

[Jari Oksanen]

Alex, 

It is possible that the documentation in vegan answers this. You can try vegandocs("decision") and go to chapter "Scaling in redundancy analysis" that also applies to capscale results.

Cheers, Jari Oksanen
________________________________________
From: R-sig-ecology <r-sig-ecology-bounces at r-project.org> on behalf of Alexander van den Bos <Alexander.vandenBos at hutton.ac.uk>
Sent: 17 December 2014 13:02
To: r-sig-ecology at r-project.org
Subject: [R-sig-eco] CAPSCALE plot output

Hello,

I have a quick question about the plot()function in capscale. This appears to plot the "site scores" from the output, but on closer inspection I've noticed that the values are not exactly the same as those produced by summary()
Does anyone have an explanation for this? Perhaps there is some scaling performed on the data before plotting it

Thanks
Alex


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