[R-sig-eco] Package bio.infer: Error Matching Taxa to ITIS Table
Rich Shepard
rshepard at appl-ecosys.com
Tue Dec 11 00:39:16 CET 2012
Following the example in Lester Yuan's 2007 paper in the Journal of
Statistical Software I've bumped into a fence and need help getting over it.
My data is in the same data frame format as his bcnt.OR data set:
head(bioinfer)
SVN Taxon CountValue
1 WP220110711 Zaitzevia.parvula 484
2 WP220110711 Tvetenia 109
3 WP220110711 Tubificidae 1054
4 WP220110711 Sweltsa 11
5 WP220110711 Suwallia.pallidula 32
6 WP220110711 Stempellinella 11
and I implement the code on page 5 of this article:
> library('bio.infer')
Loading required package: tcltk
Loading Tcl/Tk interface ... done
> options(width = 60)
> data('itis.ttable')
> jercan <- get.taxonomic(bioinfer, itis.ttable, outputFile = 'sum.taxo.tbl.txt')
Error in get.taxonomic(bioinfer, itis.ttable, outputFile =
"sum.taxo.tbl.txt") :
unused argument(s) (itis.ttable, outputFile = "sum.taxo.tbl.txt")
I'd appreciate someone explaining the error message to me so I can fix it
and continue learning how to apply this package to my data.
Rich
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