[R-sig-eco] help with pvclust
Olmo
ulmusnigra at yahoo.es
Sun Apr 29 09:37:23 CEST 2012
Hi list, I was trying to figure how to deal with some niche
overlapping analysis but I am here writing you because I am stucked
with pvclust package.
In a few lines, I did the niche overlapping analysis with
niche.overlap function in spaa package, then I used hclust in order to
calculate the clusters and I plotted the hclust object. The problem I
find is that when I try pvclust (I want to have some statistical help
in order to choose the clusters) I can't use the data dissimilaryty
data from niche.overlap cause this error:
Error en names(edges.cnt) <- paste("r", 1:rl, sep = "") :
el atributo 'names' [2] debe tener la misma longitud que el vector [0]
Sorry about spanish, I translate the best I can:
Error in names(edges.cnt) <- paste("r", 1:rl, sep = "") :
the atribute 'names' [2] must have the same length than the vector
[0]
Is there any way to use pvclust with the dissimilarity data that I
have? I am not sure if I have to transpose because I have
species/species rows columns.
By and thanks in advance for your time in reading this.
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