[R-sig-eco] Multi-state models

Bret Collier bacollier at ag.tamu.edu
Fri Sep 5 23:48:11 CEST 2008


Krzysztof,
I probably just beat Jeff to it, but you should look into RMark, it is 
an interface to MARK using R, I use it all the time and it works great, 
help is very detailed, and multi-strata models are implemented in it.

http://www.phidot.org/software/mark/rmark/


Bret

Krzysztof Sakrejda-Leavitt wrote:
> Dear colleagues,
> 
> I am am starting work on a project using multi-state models based on 
> capture-mark-recapture data to create parameter estimates for matrix 
> population models.  The software the group is currently using is MSurge, 
> but I am interested in packages within R which would substitute for that 
> function.  I am aware of pomp and msm, but i have experience with 
> neither.  Any comments on functionality and robustness in real 
> applications (or in testing) would be appreciated, especially coming 
> from anyone who has also worked with MSurge/MARK.
> Best,
> 
> Krzysztof
> 
> --------------------------------------
> Krzysztof Sakrejda-Leavitt
> 
> Organismic and Evolutionary Biology
> University of Massachusetts, Amherst
> 319 Morrill Science Center South
> 611 N. Pleasant Street
> Amherst, MA 01003
> 
> work (cell): 413-325-6555
> email: sakrejda at nsm.umass.edu
> 
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