[R-sig-eco] residual with protest in vegan
Christopher Chizinski
chizi001 at umn.edu
Sun Nov 16 17:27:16 CET 2008
I am using protest (in vegan) to assess the concordance between NMDS
scores, as shown below:
fishbug.fit <- protest(scores.bug, scores.fish,permutations = 9999)
I would like to get the average residuals from protest. When I use
residuals(),
resids.fit<-residuals(fishbug.fit)
which residuals is this returning to me? Are these the average
residuals from the 9999 permutations or are these the residuals from the
most recent permutation?
Thanks for any help,
--Chris
More information about the R-sig-ecology
mailing list