[R-sig-Debian] Error gdata and gplots packages

[Michael Dewey]

At 16:17 24/02/2014, Elodie Chapeaublanc wrote:
>Hi, I just installed Ubuntu 12.04.4. I installed 
>R by following instructions from CRAN after 
>modification into my /etc/apt/sources.list file
>
>  sudo apt-get update
>
>  sudo apt-get install r-base
>
>  sudo apt-get install r-base-dev
>
>
>  When I try to load library(gdata) ou library(gplots), I have error message :

Dear Elodie

I am not that expert either at R or French but I 
do not see any error message there. See inline below


>library(gdata)
>
>gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
>
>gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
>
>Attachement du package : ‘gdata’
>
>L'objet suivant est masqué from ‘package:stats’:
>
>     nobs

Is this what was concerning you?

>L'objet suivant est masqué from ‘package:utils’:
>
>     object.size
>
>>library(gplots)
>
>KernSmooth 2.23 loaded
>
>Copyright M. P. Wand 1997-2009
>
>Attachement du package : ‘gplots’
>
>L'objet suivant est masqué from ‘package:stats’:
>
>     lowess
>

At this point does running one of the examples from either package work?


>sessionInfo()
>R version 3.0.2 (2013-09-25)
>Platform: x86_64-pc-linux-gnu (64-bit)
>
>locale:
>  [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=fr_FR.UTF-8        LC_COLLATE=fr_FR.UTF-8
>  [5] LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8
>  [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
>[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
>
>attached base packages:
>[1] stats     graphics  grDevices utils     datasets  methods base
>
>other attached packages:
>[1] gplots_2.12.1 gdata_2.13.2
>
>loaded via a namespace (and not attached):
>[1] bitops_1.0-6       caTools_1.16       gtools_3.3.0 KernSmooth_2.23-10
>
>
>Thanks,
>
>Elodie
>
>
>
>--
>--
>Elodie Chapeaublanc
>IE Bioinformatique
>Équipe Oncologie Moléculaire
>Institut Curie - UMR 144 - CNRS
>26 rue d'Ulm - 75248 Paris Cedex 05
>Tel: +33 1 56 24 63 57
>Email: elodie.chapeaublanc at curie.fr
>
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Michael Dewey
info at aghmed.fsnet.co.uk
http://www.aghmed.fsnet.co.uk/home.html