[R-sig-Debian] rgdal cannot load shared object
Sebastian P. Luque
spluque at gmail.com
Mon Aug 22 16:46:27 CEST 2011
Hello,
I'm on a Debian sid system, and after a an upgrade of packages ('apt-get
upgrade') over the weekend, loading rgdal no longer works:
---<--------------------cut here---------------start------------------->---
R> library(rgdal)
Loading required package: sp
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/usr/local/lib/R/site-library/rgdal/libs/rgdal.so':
/usr/lib/libgdal1.7.0.so.1: undefined symbol: _ZN6libdap10AISConnectC1ERKSs
Error: package/namespace load failed for 'rgdal'
R> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=C LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] sp_0.9-84 slmisc_0.8.9 latticeExtra_0.6-18 RColorBrewer_1.0-5 lattice_0.19-31
loaded via a namespace (and not attached):
[1] grid_2.13.1
---<--------------------cut here---------------end--------------------->---
For libgdal libraries the system has:
---<--------------------cut here---------------start------------------->---
$ apt-show-versions -r -p 'libgdal.+'
libgdal-doc/sid uptodate 1.7.3-5
libgdal1-1.6.0/squeeze uptodate 1.6.3-4+b1
libgdal1-1.7.0/sid uptodate 1.7.3-5
libgdal1-dev/sid uptodate 1.7.3-5
---<--------------------cut here---------------end--------------------->---
I could remove the 1.6.0 version, but some packages still require it.
Is this a transient problem in sid or something else? Thanks.
Cheers,
--
Seb
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