[R-sig-Debian] stable backport apt problem (solved)
Robert King
robert.king at newcastle.edu.au
Tue May 2 19:03:54 CEST 2006
Hello,
I started writing this email to describe a problem, then fixed it, so
I'll display my ignorance anyway in case other people have a problem
with it.
What happened was that I could get apt-get to upgrade the documentation
packages, but not the others.
What I think was the problem was some remaining r-cran-* packages that
are now in r-recommended. These seemed to be blocking the upgrade of
r-recommended, and hence r-base-core and thus r-base.
What I did was manually download r-base-core r-base-dev and
r-recommended and install the .debs with dpkg.
Once this was done apt-get was able to fix the mess.
Here is some of the output I collected in the process.
This is the result of dpkg -l r-\* after the apt-get upgrade, which kept
back r-base r-base-dev r-base-core r-recommended
+++-==============-==============-============================================
ii r-base 2.1.0-1 GNU R statistical computing language
and env
ii r-base-core 2.1.0-1 GNU R core of statistical computing
language
ii r-base-dev 2.1.0-1 GNU R installation of auxiliary GNU R
packag
ii r-base-html 2.3.0-0sarge1 GNU R html docs for statistical
computing sy
ii r-base-latex 2.3.0-0sarge1 GNU R LaTeX docs for statistical
computing s
[ some r-cran-* packages deleted ]
un r-doc-html <none> (no description available)
un r-doc-info <none> (no description available)
un r-doc-pdf <none> (no description available)
ii r-mathlib 2.1.0-1 GNU R standalone mathematics library
ii r-recommended 2.1.0-1 GNU R collection of recommended
This is more sources.list
tolstoy:/etc/apt# cat sources.list
deb http://ftp.au.debian.org/debian/ stable main contrib non-free
deb http://ftp.au.debian.org/debian/ testing main contrib non-free
deb-src http://ftp.au.debian.org/debian/ stable main contrib non-free
deb http://security.debian.org/ stable/updates main contrib non-free
#cran backports
deb http://cran.au.r-project.org/bin/linux/debian/ stable/
tolstoy:/etc/apt# apt-get install r-base-core=2.3.0-0sarge1
Reading Package Lists... Done
Building Dependency Tree... Done
E: Version '2.3.0-0sarge1' for 'r-base-core' was not found
tolstoy:~# wget
http://cran.au.r-project.org/bin/linux/debian/stable/r-base-core_2.3.0-0sarge1_i386.deb
--02:19:54--
http://cran.au.r-project.org/bin/linux/debian/stable/r-base-core_2.3.0-0sarge1_i386.deb
=> `r-base-core_2.3.0-0sarge1_i386.deb'
Resolving proxy.newcastle.edu.au... 134.148.172.1, 134.148.20.65
Connecting to proxy.newcastle.edu.au[134.148.172.1]:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 8,315,512 [application/x-debian-package]
100%[====================================>] 8,315,512 1.03M/s
ETA 00:00
02:20:02 (1.02 MB/s) - `r-base-core_2.3.0-0sarge1_i386.deb' saved
[8315512/8315512]
tolstoy:~# dpkg -i r-base-core_2.3.0-0sarge1_i386.deb
(Reading database ... 64541 files and directories currently installed.)
Preparing to replace r-base-core 2.1.0-1 (using
r-base-core_2.3.0-0sarge1_i386.deb) ...
Unpacking replacement r-base-core ...
Setting up r-base-core (2.3.0-0sarge1) ...
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