Started by user r-hub Jenkins admin Building remotely on linux-builder-3.internal.cloudapp.net-3ae952f9 (slave swarm linux) in workspace /home/rhub/workspace/deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4 [deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4] $ /bin/sh -xe /tmp/hudson10765663957711991999.sh +R-HUB-R-HUB-R-HUBdate -u +%Y-%m-%dT%H:%M:%SZ +R-HUB-R-HUB-R-HUBwget https://builder.r-hub.io/build/in-progress/deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4/2021-04-26T09:45:18Z --2021-04-26 09:45:18-- https://builder.r-hub.io/build/in-progress/deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4/2021-04-26T09:45:18Z Resolving builder.r-hub.io (builder.r-hub.io)... 54.241.228.251 Connecting to builder.r-hub.io (builder.r-hub.io)|54.241.228.251|:443... connected. HTTP request sent, awaiting response... 200 OK Syntax error in Set-Cookie: r-hub frontend=s%3Ab7134c03-0ddd-4916-9619-f6192969f203.5eZoLfkia%2FqYfaGWjrRAB8J9us8AlIbpCQVYlgqxqQc; Path=/; Expires=Mon, 26 Apr 2021 19:45:18 GMT at position 0. Length: unspecified [application/json] Saving to: ‘2021-04-26T09:45:18Z’ 0K 2.20M=0s 2021-04-26 09:45:18 (2.20 MB/s) - ‘2021-04-26T09:45:18Z’ saved [15] +R-HUB-R-HUB-R-HUBdocker run --user docker --rm rhub/fedora-clang-devel bash -c echo $RHUB_PLATFORM +R-HUB-R-HUB-R-HUBexport RHUB_PLATFORM=linux-x86_64-fedora-clang +R-HUB-R-HUB-R-HUBecho >>>>>==================== Downloading and unpacking package file >>>>>==================== Downloading and unpacking package file +R-HUB-R-HUB-R-HUBwget -O deepdep_0.2.4.tar.gz https://builder.r-hub.io/file/c98980b0d0cf4d448cfb5c0204756944 --2021-04-26 09:45:19-- https://builder.r-hub.io/file/c98980b0d0cf4d448cfb5c0204756944 Resolving builder.r-hub.io (builder.r-hub.io)... 54.241.228.251 Connecting to builder.r-hub.io (builder.r-hub.io)|54.241.228.251|:443... connected. HTTP request sent, awaiting response... 200 OK Syntax error in Set-Cookie: r-hub frontend=s%3Ae5d41105-f533-44b8-8afe-ac1c8c3ad5cd.zU7vIoMzYgWWBcKrDTU9qORJQjYIAOQBAyWvfi2SE%2B4; Path=/; Expires=Mon, 26 Apr 2021 19:45:19 GMT at position 0. Length: 1798100 (1.7M) [application/octet-stream] Saving to: ‘deepdep_0.2.4.tar.gz’ 0K .......... .......... .......... .......... .......... 2% 10.9M 0s 50K .......... .......... .......... .......... .......... 5% 15.0M 0s 100K .......... .......... .......... .......... .......... 8% 15.1M 0s 150K .......... .......... .......... .......... .......... 11% 15.0M 0s 200K .......... .......... .......... .......... .......... 14% 11.2M 0s 250K .......... .......... .......... .......... .......... 17% 27.8M 0s 300K .......... .......... .......... .......... .......... 19% 25.2M 0s 350K .......... .......... .......... .......... .......... 22% 17.7M 0s 400K .......... .......... .......... .......... .......... 25% 22.4M 0s 450K .......... .......... .......... .......... .......... 28% 15.6M 0s 500K .......... .......... .......... .......... .......... 31% 28.9M 0s 550K .......... .......... .......... .......... .......... 34% 28.7M 0s 600K .......... .......... .......... .......... .......... 37% 27.0M 0s 650K .......... .......... .......... .......... .......... 39% 16.6M 0s 700K .......... .......... .......... .......... .......... 42% 29.3M 0s 750K .......... .......... .......... .......... .......... 45% 27.9M 0s 800K .......... .......... .......... .......... .......... 48% 26.7M 0s 850K .......... .......... .......... .......... .......... 51% 29.8M 0s 900K .......... .......... .......... .......... .......... 54% 30.3M 0s 950K .......... .......... .......... .......... .......... 56% 29.8M 0s 1000K .......... .......... .......... .......... .......... 59% 30.9M 0s 1050K .......... .......... .......... .......... .......... 62% 29.1M 0s 1100K .......... .......... .......... .......... .......... 65% 30.0M 0s 1150K .......... .......... .......... .......... .......... 68% 39.4M 0s 1200K .......... .......... .......... .......... .......... 71% 32.0M 0s 1250K .......... .......... .......... .......... .......... 74% 69.7M 0s 1300K .......... .......... .......... .......... .......... 76% 30.9M 0s 1350K .......... .......... .......... .......... .......... 79% 43.5M 0s 1400K .......... .......... .......... .......... .......... 82% 27.3M 0s 1450K .......... .......... .......... .......... .......... 85% 29.2M 0s 1500K .......... .......... .......... .......... .......... 88% 356M 0s 1550K .......... .......... .......... .......... .......... 91% 30.0M 0s 1600K .......... .......... .......... .......... .......... 93% 34.8M 0s 1650K .......... .......... .......... .......... .......... 96% 29.3M 0s 1700K .......... .......... .......... .......... .......... 99% 35.2M 0s 1750K ..... 100% 451M=0.07s 2021-04-26 09:45:19 (24.7 MB/s) - ‘deepdep_0.2.4.tar.gz’ saved [1798100/1798100] +R-HUB-R-HUB-R-HUBtar tzf deepdep_0.2.4.tar.gz +R-HUB-R-HUB-R-HUBgrep ^[^/]*/DESCRIPTION$ +R-HUB-R-HUB-R-HUBDESC=deepdep/DESCRIPTION +R-HUB-R-HUB-R-HUBtar xzf deepdep_0.2.4.tar.gz deepdep/DESCRIPTION +R-HUB-R-HUB-R-HUBecho >>>>>==================== Querying system requirements >>>>>==================== Querying system requirements +R-HUB-R-HUB-R-HUBRscript -e library(sysreqs); cat(sysreq_commands("deepdep/DESCRIPTION")) +R-HUB-R-HUB-R-HUBsysreqs=dnf install -y libgit2-devel openssl-devel pandoc pandoc-citeproc make libxml2-devel libicu-devel libcurl-devel glpk-devel git +R-HUB-R-HUB-R-HUBrm deepdep/DESCRIPTION +R-HUB-R-HUB-R-HUBecho >>>>>==================== Installing system requirements >>>>>==================== Installing system requirements +R-HUB-R-HUB-R-HUB[ ! -z dnf install -y libgit2-devel openssl-devel pandoc pandoc-citeproc make libxml2-devel libicu-devel libcurl-devel glpk-devel git ] +R-HUB-R-HUB-R-HUBecho dnf install -y libgit2-devel openssl-devel pandoc pandoc-citeproc make libxml2-devel libicu-devel libcurl-devel glpk-devel git +R-HUB-R-HUB-R-HUBpwd +R-HUB-R-HUB-R-HUBdocker run -d --user root --name deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4-1 -v /home/rhub/workspace/deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4/sysreqs.sh:/root/sysreqs.sh rhub/fedora-clang-devel bash /root/sysreqs.sh cf27fdd622d206a85679650da96a35069abaab137bdedd2ddaadb052477fc095 +R-HUB-R-HUB-R-HUBdocker attach deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4-1 Last metadata expiration check: 4:32:24 ago on Mon 26 Apr 2021 05:12:59 AM UTC. Package make-1:4.3-2.fc33.x86_64 is already installed. Package libxml2-devel-2.9.10-8.fc33.x86_64 is already installed. Package libicu-devel-67.1-4.fc33.x86_64 is already installed. Package libcurl-devel-7.71.1-9.fc33.x86_64 is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: git x86_64 2.30.2-1.fc33 updates 121 k glpk-devel x86_64 4.65-7.fc33 fedora 60 k libgit2-devel x86_64 1.0.1-3.fc33 fedora 232 k openssl-devel x86_64 1:1.1.1k-1.fc33 updates 2.2 M pandoc x86_64 2.9.2.1-8.fc33 fedora 19 M pandoc-citeproc x86_64 0.17.0.1-3.fc33 fedora 16 M Installing dependencies: flexiblas x86_64 3.0.4-1.fc33 updates 31 k flexiblas-netlib x86_64 3.0.4-1.fc33 updates 3.0 M flexiblas-openblas-openmp x86_64 3.0.4-1.fc33 updates 17 k git-core x86_64 2.30.2-1.fc33 updates 3.7 M git-core-doc noarch 2.30.2-1.fc33 updates 2.3 M glpk x86_64 4.65-7.fc33 fedora 405 k http-parser x86_64 2.9.4-3.fc33 fedora 38 k libgit2 x86_64 1.0.1-3.fc33 fedora 469 k libssh2 x86_64 1.9.0-6.fc33 fedora 117 k openblas x86_64 0.3.12-1.fc33 updates 32 k openblas-openmp x86_64 0.3.12-1.fc33 updates 4.6 M openssh x86_64 8.4p1-5.fc33 updates 419 k openssh-clients x86_64 8.4p1-5.fc33 updates 611 k pandoc-citeproc-common noarch 0.17.0.1-3.fc33 fedora 82 k pandoc-common noarch 2.9.2.1-8.fc33 fedora 359 k perl-Error noarch 1:0.17029-4.fc33 fedora 42 k perl-Git noarch 2.30.2-1.fc33 updates 43 k perl-TermReadKey x86_64 2.38-8.fc33 fedora 36 k suitesparse x86_64 5.4.0-5.fc33 fedora 1.0 M tbb x86_64 2020.3-5.fc33 updates 174 k Transaction Summary ================================================================================ Install 26 Packages Total download size: 55 M Installed size: 357 M Downloading Packages: (1/26): flexiblas-openblas-openmp-3.0.4-1.fc33. 30 kB/s | 17 kB 00:00 (2/26): flexiblas-3.0.4-1.fc33.x86_64.rpm 7.3 kB/s | 31 kB 00:04 (3/26): git-2.30.2-1.fc33.x86_64.rpm 33 kB/s | 121 kB 00:03 (4/26): git-core-doc-2.30.2-1.fc33.noarch.rpm 3.3 MB/s | 2.3 MB 00:00 (5/26): git-core-2.30.2-1.fc33.x86_64.rpm 4.9 MB/s | 3.7 MB 00:00 (6/26): openblas-0.3.12-1.fc33.x86_64.rpm 229 kB/s | 32 kB 00:00 (7/26): openssh-8.4p1-5.fc33.x86_64.rpm 2.7 MB/s | 419 kB 00:00 (8/26): openblas-openmp-0.3.12-1.fc33.x86_64.rp 16 MB/s | 4.6 MB 00:00 (9/26): openssh-clients-8.4p1-5.fc33.x86_64.rpm 5.0 MB/s | 611 kB 00:00 (10/26): openssl-devel-1.1.1k-1.fc33.x86_64.rpm 14 MB/s | 2.2 MB 00:00 (11/26): perl-Git-2.30.2-1.fc33.noarch.rpm 379 kB/s | 43 kB 00:00 (12/26): tbb-2020.3-5.fc33.x86_64.rpm 1.7 MB/s | 174 kB 00:00 (13/26): glpk-devel-4.65-7.fc33.x86_64.rpm 236 kB/s | 60 kB 00:00 (14/26): http-parser-2.9.4-3.fc33.x86_64.rpm 679 kB/s | 38 kB 00:00 (15/26): glpk-4.65-7.fc33.x86_64.rpm 952 kB/s | 405 kB 00:00 (16/26): libgit2-devel-1.0.1-3.fc33.x86_64.rpm 3.8 MB/s | 232 kB 00:00 (17/26): libgit2-1.0.1-3.fc33.x86_64.rpm 2.9 MB/s | 469 kB 00:00 (18/26): libssh2-1.9.0-6.fc33.x86_64.rpm 2.1 MB/s | 117 kB 00:00 (19/26): flexiblas-netlib-3.0.4-1.fc33.x86_64.r 499 kB/s | 3.0 MB 00:06 (20/26): pandoc-citeproc-common-0.17.0.1-3.fc33 383 kB/s | 82 kB 00:00 (21/26): pandoc-citeproc-0.17.0.1-3.fc33.x86_64 33 MB/s | 16 MB 00:00 (22/26): pandoc-2.9.2.1-8.fc33.x86_64.rpm 34 MB/s | 19 MB 00:00 (23/26): perl-Error-0.17029-4.fc33.noarch.rpm 425 kB/s | 42 kB 00:00 (24/26): pandoc-common-2.9.2.1-8.fc33.noarch.rp 1.8 MB/s | 359 kB 00:00 (25/26): perl-TermReadKey-2.38-8.fc33.x86_64.rp 673 kB/s | 36 kB 00:00 (26/26): suitesparse-5.4.0-5.fc33.x86_64.rpm 14 MB/s | 1.0 MB 00:00 -------------------------------------------------------------------------------- Total 7.6 MB/s | 55 MB 00:07 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : flexiblas-3.0.4-1.fc33.x86_64 1/26 Installing : perl-TermReadKey-2.38-8.fc33.x86_64 2/26 Installing : perl-Error-1:0.17029-4.fc33.noarch 3/26 Installing : pandoc-common-2.9.2.1-8.fc33.noarch 4/26 Installing : pandoc-citeproc-common-0.17.0.1-3.fc33.noarch 5/26 Installing : libssh2-1.9.0-6.fc33.x86_64 6/26 Installing : http-parser-2.9.4-3.fc33.x86_64 7/26 Installing : libgit2-1.0.1-3.fc33.x86_64 8/26 Installing : tbb-2020.3-5.fc33.x86_64 9/26 Installing : openssl-devel-1:1.1.1k-1.fc33.x86_64 10/26 Running scriptlet: openssh-8.4p1-5.fc33.x86_64 11/26 Installing : openssh-8.4p1-5.fc33.x86_64 11/26 Installing : openssh-clients-8.4p1-5.fc33.x86_64 12/26 Installing : git-core-2.30.2-1.fc33.x86_64 13/26 Installing : git-core-doc-2.30.2-1.fc33.noarch 14/26 Installing : perl-Git-2.30.2-1.fc33.noarch 15/26 Installing : git-2.30.2-1.fc33.x86_64 16/26 Installing : openblas-0.3.12-1.fc33.x86_64 17/26 Installing : openblas-openmp-0.3.12-1.fc33.x86_64 18/26 Installing : flexiblas-openblas-openmp-3.0.4-1.fc33.x86_64 19/26 Installing : flexiblas-netlib-3.0.4-1.fc33.x86_64 20/26 Installing : suitesparse-5.4.0-5.fc33.x86_64 21/26 Installing : glpk-4.65-7.fc33.x86_64 22/26 Installing : glpk-devel-4.65-7.fc33.x86_64 23/26 Installing : libgit2-devel-1.0.1-3.fc33.x86_64 24/26 Installing : pandoc-citeproc-0.17.0.1-3.fc33.x86_64 25/26 Installing : pandoc-2.9.2.1-8.fc33.x86_64 26/26 Running scriptlet: pandoc-2.9.2.1-8.fc33.x86_64 26/26 Verifying : flexiblas-3.0.4-1.fc33.x86_64 1/26 Verifying : flexiblas-netlib-3.0.4-1.fc33.x86_64 2/26 Verifying : flexiblas-openblas-openmp-3.0.4-1.fc33.x86_64 3/26 Verifying : git-2.30.2-1.fc33.x86_64 4/26 Verifying : git-core-2.30.2-1.fc33.x86_64 5/26 Verifying : git-core-doc-2.30.2-1.fc33.noarch 6/26 Verifying : openblas-0.3.12-1.fc33.x86_64 7/26 Verifying : openblas-openmp-0.3.12-1.fc33.x86_64 8/26 Verifying : openssh-8.4p1-5.fc33.x86_64 9/26 Verifying : openssh-clients-8.4p1-5.fc33.x86_64 10/26 Verifying : openssl-devel-1:1.1.1k-1.fc33.x86_64 11/26 Verifying : perl-Git-2.30.2-1.fc33.noarch 12/26 Verifying : tbb-2020.3-5.fc33.x86_64 13/26 Verifying : glpk-4.65-7.fc33.x86_64 14/26 Verifying : glpk-devel-4.65-7.fc33.x86_64 15/26 Verifying : http-parser-2.9.4-3.fc33.x86_64 16/26 Verifying : libgit2-1.0.1-3.fc33.x86_64 17/26 Verifying : libgit2-devel-1.0.1-3.fc33.x86_64 18/26 Verifying : libssh2-1.9.0-6.fc33.x86_64 19/26 Verifying : pandoc-2.9.2.1-8.fc33.x86_64 20/26 Verifying : pandoc-citeproc-0.17.0.1-3.fc33.x86_64 21/26 Verifying : pandoc-citeproc-common-0.17.0.1-3.fc33.noarch 22/26 Verifying : pandoc-common-2.9.2.1-8.fc33.noarch 23/26 Verifying : perl-Error-1:0.17029-4.fc33.noarch 24/26 Verifying : perl-TermReadKey-2.38-8.fc33.x86_64 25/26 Verifying : suitesparse-5.4.0-5.fc33.x86_64 26/26 Installed: flexiblas-3.0.4-1.fc33.x86_64 flexiblas-netlib-3.0.4-1.fc33.x86_64 flexiblas-openblas-openmp-3.0.4-1.fc33.x86_64 git-2.30.2-1.fc33.x86_64 git-core-2.30.2-1.fc33.x86_64 git-core-doc-2.30.2-1.fc33.noarch glpk-4.65-7.fc33.x86_64 glpk-devel-4.65-7.fc33.x86_64 http-parser-2.9.4-3.fc33.x86_64 libgit2-1.0.1-3.fc33.x86_64 libgit2-devel-1.0.1-3.fc33.x86_64 libssh2-1.9.0-6.fc33.x86_64 openblas-0.3.12-1.fc33.x86_64 openblas-openmp-0.3.12-1.fc33.x86_64 openssh-8.4p1-5.fc33.x86_64 openssh-clients-8.4p1-5.fc33.x86_64 openssl-devel-1:1.1.1k-1.fc33.x86_64 pandoc-2.9.2.1-8.fc33.x86_64 pandoc-citeproc-0.17.0.1-3.fc33.x86_64 pandoc-citeproc-common-0.17.0.1-3.fc33.noarch pandoc-common-2.9.2.1-8.fc33.noarch perl-Error-1:0.17029-4.fc33.noarch perl-Git-2.30.2-1.fc33.noarch perl-TermReadKey-2.38-8.fc33.x86_64 suitesparse-5.4.0-5.fc33.x86_64 tbb-2020.3-5.fc33.x86_64 Complete! +R-HUB-R-HUB-R-HUBdocker commit deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4-1 +R-HUB-R-HUB-R-HUBnewimage=sha256:c51e8c35798ea8b421b13c9f1819465a4d30cda8aabc1c477d5844f13414ff7e +R-HUB-R-HUB-R-HUBtempfile +R-HUB-R-HUB-R-HUBenv=/tmp/fileIdEcPq +R-HUB-R-HUB-R-HUBecho url=https://builder.r-hub.io/file/c98980b0d0cf4d448cfb5c0204756944 +R-HUB-R-HUB-R-HUBecho package=deepdep_0.2.4.tar.gz +R-HUB-R-HUB-R-HUBecho checkArgs=--as-cran +R-HUB-R-HUB-R-HUBecho build=false +R-HUB-R-HUB-R-HUBecho R_REMOTES_STANDALONE=true +R-HUB-R-HUB-R-HUBecho R_REMOTES_NO_ERRORS_FROM_WARNINGS=true +R-HUB-R-HUB-R-HUBecho TZ=Europe/London +R-HUB-R-HUB-R-HUBecho _R_CHECK_FORCE_SUGGESTS_=true _R_CHECK_CRAN_INCOMING_USE_ASPELL_=true +R-HUB-R-HUB-R-HUBecho >>>>>==================== Starting Docker container >>>>>==================== Starting Docker container +R-HUB-R-HUB-R-HUBpwd +R-HUB-R-HUB-R-HUBdocker run -i --user docker --env-file /tmp/fileIdEcPq -v /home/rhub/workspace/deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4/deepdep_0.2.4.tar.gz:/tmp/deepdep_0.2.4.tar.gz --name deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4-2 sha256:c51e8c35798ea8b421b13c9f1819465a4d30cda8aabc1c477d5844f13414ff7e /bin/bash -l R Under development (unstable) (2021-04-25 r80223) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages('BiocManager') Installing package into ‘/home/docker/R’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/BiocManager_1.30.12.tar.gz' Content type 'application/x-gzip' length 261321 bytes (255 KB) ================================================== downloaded 255 KB * installing *source* package ‘BiocManager’ ... ** package ‘BiocManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocManager) > > The downloaded source packages are in ‘/tmp/Rtmp8CIlSH/downloaded_packages’ >>>>>==================== Querying package dependencies % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 162k 100 162k 0 0 7047k 0 --:--:-- --:--:-- --:--:-- 7047k R Under development (unstable) (2021-04-25 r80223) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. Error: Bioconductor version '3.13' requires R version '4.1'; R version is too new; see https://bioconductor.org/install Execution halted >>>>>==================== Installing package dependencies /opt/R-devel/bin:/home/docker/.local/bin:/home/docker/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin /usr/bin/clang clang version 11.0.0 (Fedora 11.0.0-2.fc33) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/bin /usr/bin/clang++ -std=gnu++14 clang version 11.0.0 (Fedora 11.0.0-2.fc33) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/bin Pandoc: /usr/bin/pandoc -rwxr-xr-x 1 root root 155174680 Sep 20 2020 /usr/bin/pandoc -rwxr-xr-x 1 root root 117462296 Sep 20 2020 /usr/bin/pandoc-citeproc R Under development (unstable) (2021-04-25 r80223) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. Error: Bioconductor version '3.13' requires R version '4.1'; R version is too new; see https://bioconductor.org/install Execution halted Error: Bioconductor version '3.13' requires R version '4.1'; R version is too new; see https://bioconductor.org/install Execution halted Build step 'Execute shell' marked build as failure Pinging https://builder.r-hub.io/build/FAILURE/deepdep_0.2.4.tar.gz-f7eb8d22d13e4848a881adfff3850af4/2021-04-26T09:45:50Z {"status":"ok"} Finished: FAILURE